Jatropha Genome Database

JcCA0261081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261081.10 - phase: 0 /pseudo/partial
         (281 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g103250.1 Helix-hairpin-helix motif, class 2 chr01_ps...   293   8e-80
IMGA|Medtr1g103250.2 Helix-hairpin-helix motif, class 2 chr01_ps...   292   1e-79
IMGA|Medtr1g103250.3 DNA repair protein (XPGC)/yeast Rad chr01_p...   120   7e-28
IMGA|Medtr4g136470.1 Helix-hairpin-helix motif, class 2 chr04_ps...    64   7e-11
IMGA|Medtr7g083910.1 Helix-hairpin-helix motif, class 2 chr07_ps...    61   8e-10

>IMGA|Medtr1g103250.1 Helix-hairpin-helix motif, class 2
           chr01_pseudomolecule_IMGAG_V3 21456961-21449440 E
           EGN_Mt090430 20090702
          Length = 391

 Score =  293 bits (749), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 142/184 (77%), Positives = 159/184 (86%), Gaps = 8/184 (4%)

Query: 26  SRRADATEDLAQALETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEA 85
           S+RA+AT  L +ALE   KEDIEK+SKRTVKVTKQHN+DCKRLLRLMGVPV+EAPSEAEA
Sbjct: 103 SKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEA 162

Query: 86  QCAALCKSGK-------VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILE 138
           QCAALCK+GK       VYAVASEDMDSLTFGAP+FLRHLMDPSS+KIPVMEF++ KILE
Sbjct: 163 QCAALCKAGKASSNLLRVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILE 222

Query: 139 ELNLNMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENINRDSLFVAYSD 198
           EL+L MDQFIDLCILSGCDYCD+IRGIGG+TALKLIRQHG IE ILENI+++   V   D
Sbjct: 223 ELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVP-DD 281

Query: 199 TKYQ 202
             YQ
Sbjct: 282 WPYQ 285


>IMGA|Medtr1g103250.2 Helix-hairpin-helix motif, class 2
           chr01_pseudomolecule_IMGAG_V3 21456961-21449440 E
           EGN_Mt090430 20090702
          Length = 376

 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/184 (77%), Positives = 159/184 (86%), Gaps = 8/184 (4%)

Query: 26  SRRADATEDLAQALETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEA 85
           S+RA+AT  L +ALE   KEDIEK+SKRTVKVTKQHN+DCKRLLRLMGVPV+EAPSEAEA
Sbjct: 88  SKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEA 147

Query: 86  QCAALCKSGK-------VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILE 138
           QCAALCK+GK       VYAVASEDMDSLTFGAP+FLRHLMDPSS+KIPVMEF++ KILE
Sbjct: 148 QCAALCKAGKASSNLLRVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILE 207

Query: 139 ELNLNMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENINRDSLFVAYSD 198
           EL+L MDQFIDLCILSGCDYCD+IRGIGG+TALKLIRQHG IE ILENI+++   V   D
Sbjct: 208 ELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVP-DD 266

Query: 199 TKYQ 202
             YQ
Sbjct: 267 WPYQ 270


>IMGA|Medtr1g103250.3 DNA repair protein (XPGC)/yeast Rad
           chr01_pseudomolecule_IMGAG_V3 21456961-21449440 E
           EGN_Mt090430 20090702
          Length = 179

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 64/71 (90%)

Query: 26  SRRADATEDLAQALETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEA 85
           S+RA+AT  L +ALE   KEDIEK+SKRTVKVTKQHN+DCKRLLRLMGVPV+EAPSEAEA
Sbjct: 103 SKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEA 162

Query: 86  QCAALCKSGKV 96
           QCAALCK+GK 
Sbjct: 163 QCAALCKAGKA 173


>IMGA|Medtr4g136470.1 Helix-hairpin-helix motif, class 2
           chr04_pseudomolecule_IMGAG_V3 33334609-33330048 E
           EGN_Mt090430 20090702
          Length = 613

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 5/147 (3%)

Query: 52  KRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGA 111
           ++ V ++ Q   +  ++L+   V  + AP EA+AQ   L  S +V AV +ED D + FG 
Sbjct: 120 QKAVDISPQIARELIQVLKQENVQYVVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGC 179

Query: 112 PRFLRHLMDPSSRKIPVMEFEIKKILEELN---LNMDQFIDLCILSGCDYCDSIRGIGGL 168
           PR +   MD   + +   ++ + +  +ELN    N    +++CILSGCDY  S+ G+G  
Sbjct: 180 PRII-FKMDKFGQGV-QFQYSMLQKNKELNFEGFNKQMLLEMCILSGCDYLQSLPGMGLK 237

Query: 169 TALKLIRQHGCIETILENINRDSLFVA 195
            A   I++    + +L+++  + + V 
Sbjct: 238 KAHASIKRFKSYDKVLKHLKYNGVSVP 264


>IMGA|Medtr7g083910.1 Helix-hairpin-helix motif, class 2
           chr07_pseudomolecule_IMGAG_V3 18038402-18033538 E
           EGN_Mt090430 20090702
          Length = 612

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 63  EDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPS 122
           ++C  L +L+G+PV++A  EAEA CA L   G V A  + D D+  FGA   ++    P+
Sbjct: 121 QECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSF-SPN 179

Query: 123 SRKIPVMEFEIKKILEELNLNMDQFIDLCILSGCDY-CDSIRGIGGLTALKLIRQHG 178
           S++ P   + +  I   L L     I + +L G D+    ++GIG  +AL+ ++  G
Sbjct: 180 SKE-PFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQAFG 235