Jatropha Genome Database
- JcCA0259681.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0259681.10 + phase: 0 /partial
(133 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g024920.1 Zinc finger, CCCH-type chr02_pseudomolecule... 54 3e-08
IMGA|AC235753_1.1 Zinc finger, CCCH-type AC235753.1 3351-1 E EGN... 49 9e-07
IMGA|Medtr8g109990.1 Zinc finger, CCCH-type chr08_pseudomolecule... 49 1e-06
IMGA|Medtr8g139290.1 Zinc finger, CCCH-type chr08_pseudomolecule... 48 1e-06
IMGA|Medtr7g089530.1 Zinc finger, CCCH-type; Sugar transporter s... 47 2e-06
IMGA|Medtr5g092550.1 Zinc finger, CCCH-type chr05_pseudomolecule... 45 8e-06
>IMGA|Medtr2g024920.1 Zinc finger, CCCH-type
chr02_pseudomolecule_IMGAG_V3 6479212-6484900 E
EGN_Mt090430 20090702
Length = 482
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
YP RPGEK+C++++ T CKFG +CKFDHPV
Sbjct: 137 YPLRPGEKECSYFVKTGQCKFGATCKFDHPV 167
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R G+ C +YM TR+CKFG SCK+ HP
Sbjct: 90 YPERVGQPVCQYYMRTRSCKFGASCKYHHP 119
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YPQRP E DC +Y+ T C FG C+F+HP
Sbjct: 44 YPQRPDEVDCTYYLRTGFCGFGSRCRFNHP 73
>IMGA|AC235753_1.1 Zinc finger, CCCH-type AC235753.1 3351-1 E
EGN_Mt090430 20090702
Length = 444
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
YP RP +DC+ Y+ T TCKFG +CKF+HP+
Sbjct: 171 YPLRPEAEDCSFYLKTGTCKFGFNCKFNHPL 201
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 35 PQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGG 70
P R GEK+C +YM T +CKFG +CKF+HP GG
Sbjct: 265 PIRLGEKECPYYMRTGSCKFGANCKFNHPDPTSVGG 300
>IMGA|Medtr8g109990.1 Zinc finger, CCCH-type
chr08_pseudomolecule_IMGAG_V3 24821248-24817227 E
EGN_Mt090430 20090702
Length = 573
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
+P RP +DC+ YM T +CKFG +CKF+HP+
Sbjct: 231 FPLRPEAEDCSFYMKTGSCKFGFNCKFNHPI 261
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 35 PQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGG 70
P R GE++C +YM T +CKFG +C+F+HP GG
Sbjct: 325 PIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGG 360
>IMGA|Medtr8g139290.1 Zinc finger, CCCH-type
chr08_pseudomolecule_IMGAG_V3 33956668-33960343 E
EGN_Mt090430 20090702
Length = 511
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGG 70
YP R GEK+C++Y+ T CKFG +CKF HP P GG
Sbjct: 134 YPLRVGEKECSYYVKTGQCKFGATCKFHHP--QPAGG 168
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 35 PQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIP 72
P+RP +++C HYM T CKFG +C++ HP P+ G P
Sbjct: 331 PERPDQQECQHYMKTGDCKFGSTCRYHHP---PDMGAP 365
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YPQRP E DC +Y+ T C +G C+F+HP
Sbjct: 43 YPQRPDEADCIYYLRTGFCGYGSRCRFNHP 72
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 35 PQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
P RPG + C HY CKFG +CKFDHP
Sbjct: 375 PLRPGAQPCTHYTQRGFCKFGSACKFDHP 403
>IMGA|Medtr7g089530.1 Zinc finger, CCCH-type; Sugar transporter
superfamily chr07_pseudomolecule_IMGAG_V3
19719766-19712854 E EGN_Mt090430 20090702
Length = 428
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 28 ASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
A N+ YP RP E +CA+Y+ T CKFG++CKF HP
Sbjct: 122 ALNILGYPLRPNESECAYYLRTGQCKFGNTCKFHHP 157
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+ PGE DC++Y+ T C+FG +C+F+HP
Sbjct: 27 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 56
>IMGA|Medtr5g092550.1 Zinc finger, CCCH-type
chr05_pseudomolecule_IMGAG_V3 36300128-36294888 E
EGN_Mt090430 20090702
Length = 422
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 20 AKRYRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWV 66
+ R R ++P YP RPGE DC +Y+ T C +G +C+++HP +
Sbjct: 31 STRDRDAVPQSMP-YPDRPGEPDCVYYLRTGMCGYGSNCRYNHPANI 76