Jatropha Genome Database

JcCA0254841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254841.10 - phase: 2 /partial/short
         (45 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g150290.1 Glycoside hydrolase, catalytic core chr03_p...    62   5e-11

>IMGA|Medtr3g150290.1 Glycoside hydrolase, catalytic core
           chr03_pseudomolecule_IMGAG_V3 39561825-39558471 E
           EGN_Mt090430 20090702
          Length = 213

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 7   MADTNLKSPDDFVPEGVPGIGSVYNVAPYSSILLEAKL 44
           + DTNL+SPDD V +GVPGIG  Y++APYSSILLEAK 
Sbjct: 176 VVDTNLQSPDDIVLDGVPGIGETYSIAPYSSILLEAKF 213