Jatropha Genome Database

JcCA0254141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254141.20 + phase: 0 /partial
         (352 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g068860.1 H+-transporting two-sector ATPase, gamma su...   393   e-110

>IMGA|Medtr3g068860.1 H+-transporting two-sector ATPase, gamma
           subunit chr03_pseudomolecule_IMGAG_V3 16339817-16340876
           E EGN_Mt090430 20090702
          Length = 351

 Score =  393 bits (1010), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/301 (63%), Positives = 229/301 (76%), Gaps = 1/301 (0%)

Query: 51  QIHCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINE 110
           QI CG+RE+R RI+SVK TQKITEAMKLVAAA+VRRAQEAV+N RPFSE   E L++IN+
Sbjct: 22  QIRCGIREIRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQ 81

Query: 111 QLQTEDIDAPLTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLKDLGLNYTVI 170
            LQ +D+  PLT VRPVK VAL+V TGDRGLCGGFNN            LK+LG+N  VI
Sbjct: 82  SLQNDDVVVPLTAVRPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMELKNLGINCVVI 141

Query: 171 SVGKKGNSYFLRRPYIPVDRFLEGTSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFV 230
           SVGKKG+SYF R  ++ VDRF++    PT K+AQ IADDVFSLFV+EEVDKVEL+YTKFV
Sbjct: 142 SVGKKGSSYFNRSGFVEVDRFIDNVGFPTTKDAQIIADDVFSLFVTEEVDKVELVYTKFV 201

Query: 231 SLVKSDPVIHTLLPLSPKGEICDINGNCVDAAEDEFFRLTTREGKLTVERDVVRTQTAD- 289
           SLV+ +PVI TLLPLS KGE+ D+NGN VD  EDEFFRLT+++GKL ++RDV + +  D 
Sbjct: 202 SLVRFNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLALKRDVKKKKMKDG 261

Query: 290 FSPILQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXRMSAMSNATDNASELKKNL 349
           F P+++FEQDP QILDA++PLYLNSQ+              RM AMSNATDNA EL K L
Sbjct: 262 FVPVMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKEL 321

Query: 350 S 350
           S
Sbjct: 322 S 322