Jatropha Genome Database

JcCA0254131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254131.20 + phase: 0 /partial
         (424 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233659_24.1 MutS 2 protein AC233659.1 104034-100163 E EGN...   324   6e-89
IMGA|AC233659_25.1 DNA mismatch repair MutS family protein, rela...   100   1e-21

>IMGA|AC233659_24.1 MutS 2 protein AC233659.1 104034-100163 E
           EGN_Mt090430 20090702
          Length = 775

 Score =  324 bits (830), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 158/275 (57%), Positives = 212/275 (77%), Gaps = 8/275 (2%)

Query: 158 RYGPLLEILQRCSFQIELEQKIGFCLDCNLSIILDRASEELEIIRSERKRNMENLDTLLK 217
           RY PLLEILQ C+F + LE++I FC+DCNL +ILDRASE+LEIIRSERKRN+E LD+LLK
Sbjct: 7   RYSPLLEILQNCNFLMGLERRIEFCIDCNLLVILDRASEDLEIIRSERKRNIEILDSLLK 66

Query: 218 GISTRIFQAGGADRPLVTKRRSRLCVGVRATHRHLIRNGVILDVSGSGATYFMEPDDAVE 277
            +S++IF+AGG DRP +TKRRSR+CVG+RA++R+L+  G++L+ S SGATYFMEP +A++
Sbjct: 67  EVSSQIFRAGGIDRPFITKRRSRMCVGIRASYRYLLPEGIVLNASSSGATYFMEPKEAID 126

Query: 278 LNNLEVMLSNSERAEEIVILSLLTSEIAQSEKEIKHLLDGILKVDLAFSRAAYAQQMNAI 337
           LNN+EV LSNSE AEE  ILS+L SEIA S+ EI +LLD IL+VDLAF+RAAYAQ MN +
Sbjct: 127 LNNMEVRLSNSEAAEERAILSMLASEIANSKSEINYLLDKILEVDLAFARAAYAQWMNGV 186

Query: 338 CPIL---TSEGCE-----GELSGGAHYPLLIDIEGIRHPLLIGSSQRSLSDFLGSNSQNS 389
           CPI    T E CE      ++S      L ++IEG+RHPLL+ SS  ++SD +   S N+
Sbjct: 187 CPIFSLGTLEVCESVEKDNDISVVQDDDLTVNIEGMRHPLLLESSLENISDNVTLRSGNA 246

Query: 390 TELNYGDGVMATERLSETVSEFPVPINIKVECGTK 424
            EL  G+G MA++  S+ +++FPVP++ K+  GT+
Sbjct: 247 AELGNGNGTMASKSASQGITDFPVPVDFKIRSGTR 281


>IMGA|AC233659_25.1 DNA mismatch repair MutS family protein, related
           AC233659.1 105343-104826 E EGN_Mt090430 20090702
          Length = 156

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 7/109 (6%)

Query: 23  TFKPLFSLQNSPDSISPQLSLQSETLKVLEWSSLCDRLSYFTSTSMGNSVARNASIPIGK 82
           +FKP F      +S+      QS++LK LEW+S+C +LS FTSTSMG+S A NA +P+G 
Sbjct: 20  SFKPRFCYSTESNSV------QSDSLKTLEWNSICKQLSAFTSTSMGSSAANNARLPVGL 73

Query: 83  SLQESRKLLDQTAAALAVMQSGPLDFSEIEDVTGIVDSAVSGNLLTIGE 131
           +   S+KLLDQT+AA  V Q   LDFS I D+T I+  +VSG LLT+ E
Sbjct: 74  TPHHSQKLLDQTSAARLVPQQQ-LDFSGIHDLTDILSVSVSGKLLTVPE 121