Jatropha Genome Database

JcCA0254131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254131.10 + phase: 0 /pseudo/partial
         (136 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g014750.3 Metallo-dependent hydrolase, composite chr0...   109   5e-25
IMGA|Medtr2g014750.1 Dihydroorotase region chr02_pseudomolecule_...   109   5e-25

>IMGA|Medtr2g014750.3 Metallo-dependent hydrolase, composite
           chr02_pseudomolecule_IMGAG_V3 3872068-3865685 E
           EGN_Mt090430 20090702
          Length = 504

 Score =  109 bits (272), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/66 (69%), Positives = 57/66 (86%)

Query: 71  DIVIWEPSTVFDLNNDLPIYFKHPSISAYMGTKLSGKVLATFVRGNLVYKEGKHASAACG 130
           DIV+W+P   FDLN+D P++ KHPS+SAYMG++L+GKVL TFVRGNLV+K+GKHA AACG
Sbjct: 439 DIVVWQPEVEFDLNDDYPVFIKHPSLSAYMGSRLAGKVLDTFVRGNLVFKDGKHAPAACG 498

Query: 131 SLILAK 136
             ILAK
Sbjct: 499 VPILAK 504


>IMGA|Medtr2g014750.1 Dihydroorotase region
           chr02_pseudomolecule_IMGAG_V3 3875358-3865685 E
           EGN_Mt090430 20090702
          Length = 586

 Score =  109 bits (272), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/66 (69%), Positives = 57/66 (86%)

Query: 71  DIVIWEPSTVFDLNNDLPIYFKHPSISAYMGTKLSGKVLATFVRGNLVYKEGKHASAACG 130
           DIV+W+P   FDLN+D P++ KHPS+SAYMG++L+GKVL TFVRGNLV+K+GKHA AACG
Sbjct: 521 DIVVWQPEVEFDLNDDYPVFIKHPSLSAYMGSRLAGKVLDTFVRGNLVFKDGKHAPAACG 580

Query: 131 SLILAK 136
             ILAK
Sbjct: 581 VPILAK 586