Jatropha Genome Database

JcCA0251661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0251661.10 - phase: 1 /partial
         (179 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g025560.1 hypothetical protein chr08_pseudomolecule_I...   130   3e-31
IMGA|Medtr5g009650.1 hypothetical protein chr05_pseudomolecule_I...   112   1e-25
IMGA|Medtr8g025570.1 hypothetical protein chr08_pseudomolecule_I...    61   3e-10
IMGA|Medtr5g009640.1 hypothetical protein chr05_pseudomolecule_I...    55   2e-08

>IMGA|Medtr8g025560.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 5217804-5214751 E
           EGN_Mt090430 20090702
          Length = 623

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 86/117 (73%), Gaps = 2/117 (1%)

Query: 63  KVDDFPVRKPNTYSHQNVMACLSNLPNNEDLKDDASARQLFKSVVGGSMNVLKIRIINFL 122
           K  D  ++K NTY+ Q V A LSN  NNE L DD+ +  L KS+ GGSMN  K+R+++F 
Sbjct: 2   KKPDQLIKKQNTYAPQRVAAHLSNAANNEGLIDDSCS--LSKSLTGGSMNACKMRVLSFR 59

Query: 123 LADRVIQGNAVSFVPRSRTRMILSEKPNDGTVAMHYGEPEDGDPLSVEDYLPSLPNT 179
             +RV+QGN V+ VPR RTRMI++EKP+DGTVA+HYG+ ++ D +  ED+LP+LPNT
Sbjct: 60  WNERVVQGNVVNLVPRFRTRMIMAEKPSDGTVALHYGDIDESDFIGAEDHLPTLPNT 116


>IMGA|Medtr5g009650.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 2166323-2167844 E
           EGN_Mt090430 20090702
          Length = 276

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 2/114 (1%)

Query: 66  DFPVRKPNTYSHQNVMACLSNLPNNEDLKDDASARQLFKSVVGGSMNVLKIRIINFLLAD 125
           D P+ K NTY+ Q+V   L+N  NNE L D++S+  L KS++ GSMN  K+R+++F+  +
Sbjct: 5   DPPIEKQNTYAPQHVAFHLANATNNEGLIDESSS--LSKSLIVGSMNECKMRVLSFIWNE 62

Query: 126 RVIQGNAVSFVPRSRTRMILSEKPNDGTVAMHYGEPEDGDPLSVEDYLPSLPNT 179
           RV++G+ V+ VPR RTRMI++E P+ GTVA HYG  ++ D    E+YLP+L NT
Sbjct: 63  RVVKGHVVNLVPRFRTRMIMAESPSGGTVAWHYGNIDESDFKGAEEYLPTLSNT 116


>IMGA|Medtr8g025570.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 5222331-5218168 E
           EGN_Mt090430 20090702
          Length = 700

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 3   PQTPVMSGVGSPASVSNISVPLNANSPSVGT---PPMADQTMLERLSKIEMVTIRHQLNS 59
           P+TP MSGV SPASVS   VP NANSPSVGT   P    Q M +R SKI+MVT     + 
Sbjct: 614 PKTPAMSGVASPASVS-TGVPFNANSPSVGTSALPEQGLQHMFDRFSKIDMVTTSVVWDG 672

Query: 60  KKNKVDDFPVRKPNTYSHQNV 80
              +V+   + K N    +NV
Sbjct: 673 LGWEVESHHMNKLNVVLDENV 693


>IMGA|Medtr5g009640.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 2161133-2165674 E
           EGN_Mt090430 20090702
          Length = 849

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 3   PQTPVMSGVGSPASVSNISVPLNANSPSVGTPPMADQ---TMLERLSKIEMVTIRH 55
           P+TP MSGV SP SV    V  NANSPSVGT   + Q    M ER SKI+MVT R+
Sbjct: 772 PKTPSMSGVASPDSVFT-DVLFNANSPSVGTSAFSKQGLQNMFERFSKIDMVTTRY 826