Jatropha Genome Database

JcCA0250521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0250521.10 + phase: 0 
         (119 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g103180.1 DNA-binding HORMA chr03_pseudomolecule_IMGA...   229   2e-61

>IMGA|Medtr3g103180.1 DNA-binding HORMA
           chr03_pseudomolecule_IMGAG_V3 25336861-25335015 F
           EGN_Mt090430 20090702
          Length = 207

 Score =  229 bits (585), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/119 (92%), Positives = 112/119 (94%)

Query: 1   MSKVTNEVLERWNFSIETDSEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEA 60
           MSK T EVLERWNFSIETD+EVVEKG SREKSDKEIMREIQAIMRQIASSITYLPCLDE 
Sbjct: 89  MSKSTGEVLERWNFSIETDNEVVEKGESREKSDKEIMREIQAIMRQIASSITYLPCLDEP 148

Query: 61  CVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ 119
           CVFDVLAYT+ DV VPFTW ESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Sbjct: 149 CVFDVLAYTNTDVEVPFTWTESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ 207