Jatropha Genome Database

JcCA0249491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0249491.10 - phase: 1 /pseudo/partial
         (435 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g135990.1 hypothetical protein chr03_pseudomolecule_I...    53   3e-07

>IMGA|Medtr3g135990.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 34174220-34170227 E
           EGN_Mt090430 20090702
          Length = 118

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 36/52 (69%)

Query: 160 YLRRSEASGFLLPLSGAVNSSAVAAIVGSMCQLVVKEIANGDEQVKADAIRI 211
           YL RS A  F+LPLS  V SS+VA IVG MCQL VKEI +   +++A+ I +
Sbjct: 30  YLLRSGAYAFMLPLSDGVYSSSVAEIVGCMCQLAVKEIKSLVLRLEANDIEV 81