Jatropha Genome Database

JcCA0247421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0247421.10 + phase: 1 /partial
         (65 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g106650.1 Multi antimicrobial extrusion protein MatE ...    54   2e-08
IMGA|Medtr5g106650.3 Multi antimicrobial extrusion protein MatE ...    52   5e-08

>IMGA|Medtr5g106650.1 Multi antimicrobial extrusion protein MatE
           chr05_pseudomolecule_IMGAG_V3 42910856-42916844 E
           EGN_Mt090430 20090702
          Length = 584

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 2   SMLWLISLMVFIMVYQTFH-----MLLGLCLFMGMRTIAGYMRLLSRNGPWWFLQDD 53
           SM+++ ++    +V+   H     + LGL LFM +R +AG +RLLS+NGPWWFL  D
Sbjct: 490 SMMFVGAVSSAFLVFSPSHFGLRGVWLGLTLFMALRVVAGSVRLLSKNGPWWFLHKD 546


>IMGA|Medtr5g106650.3 Multi antimicrobial extrusion protein MatE
           chr05_pseudomolecule_IMGAG_V3 42910856-42916844 E
           EGN_Mt090430 20090702
          Length = 295

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 25/31 (80%)

Query: 23  LGLCLFMGMRTIAGYMRLLSRNGPWWFLQDD 53
           LGL LFM +R +AG +RLLS+NGPWWFL  D
Sbjct: 227 LGLTLFMALRVVAGSVRLLSKNGPWWFLHKD 257