Jatropha Genome Database

JcCA0247261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0247261.10 + phase: 0 /pseudo/partial
         (642 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g087380.1 {, related, putative chr07_pseudomolecule_I...    75   1e-13
IMGA|Medtr8g032020.1 {, related, related chr08_pseudomolecule_IM...    52   8e-07

>IMGA|Medtr7g087380.1 {, related, putative
           chr07_pseudomolecule_IMGAG_V3 18726814-18721510 E
           EGN_Mt090430 20090702
          Length = 929

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 129/271 (47%), Gaps = 37/271 (13%)

Query: 138 VHTNENCMHHERPNE--INLQVNMNEATEAFINQKLIDGKHLIADGASHQSKNFLDALKI 195
           +H ++N   H++ N+  +N +    +A   F+NQK+++GK ++ D     S   ++ L++
Sbjct: 183 MHDDDNSKSHDQSNQKNVNSEELARDAIHDFVNQKILNGKDMVEDKKFLCSNEVMETLQV 242

Query: 196 LNSNKDLFIKLLQDPNSLLVKHIEDLRDSQTK-KLQNKSFARGGLSECQTRNTRKCNLLM 254
           ++S+K+LF+KLLQDPNS L+K+I++L ++Q K + +  S A    +E    N ++   ++
Sbjct: 243 ISSDKELFLKLLQDPNSHLLKYIQELENAQGKTEKEYNSVANSNFTEQDLHNLKQTREIV 302

Query: 255 ---------------------ETGDFQPLEKIVVFRPSSKSLQNHADRTSNDSPQI-HYS 292
                                +  + +   +IV+ +P+   +QN  + ++ DS  I HY 
Sbjct: 303 SRKHRKFFWKRVKSPSKVPTNKNTETEIPNRIVILKPAPTGMQNSKNESNVDSRDIVHYK 362

Query: 293 LRSVHQSVK-PIRFPFKQMKRTLMHAIGVSRKEQQLLTDNLLHDKSVHGFEGGQCSKEAV 351
             S   SV+    F   ++KR   H IG  +           H+++V     G   K   
Sbjct: 363 GPS---SVRVGSHFSLTEIKRKFKHVIGKEKHGN--------HERNVERENNGSRGKTIG 411

Query: 352 AGSIKGLSPNEASSDFERMTKSSMDVNRKDQ 382
               +  SPN+     E++ +   DV + D+
Sbjct: 412 NDKFEMRSPNKDRFFTEKIARPMFDVVKGDK 442


>IMGA|Medtr8g032020.1 {, related, related
           chr08_pseudomolecule_IMGAG_V3 7032063-7038096 E
           EGN_Mt090430 20090702
          Length = 876

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 28/211 (13%)

Query: 147 HERPNEINLQV----NMNEATEAFINQKLIDGKHLIADGASHQSKNFLDALKILNSNKDL 202
           H +PN+    V    +  +A   F+NQ +++GK L        S   ++AL++++S+K+L
Sbjct: 197 HGQPNQKQKHVVSEKHSRDAIREFVNQMILNGKDLEEARKFLFSDEIMEALQLISSDKEL 256

Query: 203 FIKLLQDPNSLLVKHIEDLRDSQTKKLQNKSFARG--GLSE--CQTRNTRKCNLLM---- 254
           F+  LQ+PN L++K +++  +S   K  + +F+    G  E   +  N +K N       
Sbjct: 257 FLAFLQNPNPLVLKCVQEFENSHRVKDNDSNFSEQDHGNKEQTSEIVNHKKHNFFRKKVK 316

Query: 255 --------ETGDFQPLEKIVVFRPSSKSLQNHAD----RTSNDS-PQIHYSLRSVHQSVK 301
                   E  +     +IV+ +P S   +N        +S DS   + Y+  SV  S  
Sbjct: 317 SQSKNSTNENVNTNISNRIVILKPGSIGSENSKTGKNIASSLDSHDTVEYNSPSVRGSS- 375

Query: 302 PIRFPFKQMKRTLMHAIGVSRKEQQLLTDNL 332
              F   ++K+ L HAIG  R  + +  DN+
Sbjct: 376 --HFSLTEIKKKLKHAIGRERHGKAIGKDNV 404