Jatropha Genome Database

JcCA0246931.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0246931.20 + phase: 0 /TE
         (478 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG...    73   3e-13
IMGA|Medtr3g058900.1 Zinc finger, CCHC-type chr03_pseudomolecule...    60   2e-09
IMGA|Medtr6g036540.1 Zinc finger, CCHC-type chr06_pseudomolecule...    50   3e-06

>IMGA|Medtr8g074430.1 integrase, related
           chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 14/200 (7%)

Query: 10  PPHFNGENYHVWAVKMRAYFKGLGL--WQYVEE---------NRVSLPLNQNPTLQQIRQ 58
           PP F+G+ Y++W  +M+ + +G     W+ +E          N  + P ++    +    
Sbjct: 18  PPFFDGKKYYIWKHRMQIFVQGTDFDAWKAIEHGPFFPTHIVNGFTKPKSKT---EWTDD 74

Query: 59  HEEEVAKAPKALSYIYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKTRQMQVFNLRK 118
            +++V    +A   I  A+ +  F+ +M CETA E W  L+  + G  + +  ++  L  
Sbjct: 75  DKKKVHPDSRAKHLISCALCNDEFSNVMYCETAREMWNTLQNIHEGTGEVKMARIGYLTG 134

Query: 119 EFEMLKMKDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDD 178
           E+E   MK  E + D   R   +VN +  LG+++  +  V KV+  L +K+  K+ ++  
Sbjct: 135 EYERFCMKPGENIHDMQMRFYDVVNHLASLGKKIPNEDLVSKVLRCLSKKWRHKVRAITK 194

Query: 179 TWDMSQISLNVLSNALQAVE 198
           + D   + L  L   L+  E
Sbjct: 195 SIDFPTMLLVSLFRELEEHE 214


>IMGA|Medtr3g058900.1 Zinc finger, CCHC-type
           chr03_pseudomolecule_IMGAG_V3 13082612-13083121 H
           EGN_Mt090430 20090702
          Length = 169

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 2/101 (1%)

Query: 125 MKDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDDTWDMSQ 184
           MK  +K+KDY   ++ I  Q+++ GE L +K  +EK++ TLP +F+  + ++++T D+++
Sbjct: 1   MKKEDKIKDYFSSVLTITKQMKICGETLFDKSVMEKILRTLPSQFDHLVITIEETKDLNE 60

Query: 185 ISLNVLSNALQAVEQRKAYREEEIFGEKALVV--TQQPKMK 223
             +  L  AL+A E +   R+EE   E++L+    Q+  MK
Sbjct: 61  AKIEELQGALEAHEMKVTSRKEEKDEEQSLLARFKQEESMK 101


>IMGA|Medtr6g036540.1 Zinc finger, CCHC-type
           chr06_pseudomolecule_IMGAG_V3 8117470-8116658 H
           EGN_Mt090430 20090702
          Length = 270

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 13  FNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHEEEVAKAPKALSY 72
            NG NY+ W   M  + KG  LW+YV  ++      + PT+    + EE  +K  + +++
Sbjct: 14  LNGSNYNQWPEAMCGFLKGRRLWRYVTGDK------KCPTISLAEKLEEWDSKNHQIITW 67

Query: 73  IYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKTRQMQVFNLRKEFEMLKMKDNEKVK 132
                   I  +    E A E W+ LK +Y   + + Q Q+    K+   LK +  + V 
Sbjct: 68  CRKTSTPSIHLQFGRFENAKEVWDYLKQRYTISDLSHQYQLL---KDLSNLKQQSGQPVY 124

Query: 133 DYVDRIMKIVNQI 145
           +++ ++  I NQ+
Sbjct: 125 EFLAQMEIIWNQL 137