Jatropha Genome Database

JcCA0246001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0246001.10 + phase: 1 /pseudo/partial
         (101 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g111520.1 Fumarate lyase; Adenylosuccinate lyase chr0...    69   7e-13
IMGA|Medtr7g111500.1 Fumarate lyase; Adenylosuccinate lyase, put...    67   2e-12

>IMGA|Medtr7g111520.1 Fumarate lyase; Adenylosuccinate lyase
          chr07_pseudomolecule_IMGAG_V3 26222949-26228352 E
          EGN_Mt090430 20090702
          Length = 530

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 38/42 (90%)

Query: 53 DFELSSLTALSPLDGRYWGKVKDLSPHMSEYGLIFYRVLVEV 94
          DFELS+LTALSPLDGRY  KV++L+P MSEYGL ++RV+VE+
Sbjct: 57 DFELSTLTALSPLDGRYRQKVQELAPFMSEYGLNYFRVIVEI 98


>IMGA|Medtr7g111500.1 Fumarate lyase; Adenylosuccinate lyase,
          putative chr07_pseudomolecule_IMGAG_V3
          26216902-26217209 E EGN_Mt090430 20090702
          Length = 70

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 42/51 (82%)

Query: 47 MKMAARDFELSSLTALSPLDGRYWGKVKDLSPHMSEYGLIFYRVLVEVPSF 97
          ++  + DFELS+LTALSPLDGRY  K+++L+P MSEYGL ++RV+VEV  F
Sbjct: 2  LQAHSGDFELSTLTALSPLDGRYRQKMQELTPLMSEYGLNYFRVIVEVHPF 52