Jatropha Genome Database

JcCA0245241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0245241.10 + phase: 0 /partial
         (249 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g129340.1 Dihydrodipicolinate reductase chr01_pseudom...   411   e-115
IMGA|Medtr1g129340.2 Dihydrodipicolinate reductase, bacterial ch...   252   1e-67
IMGA|Medtr2g026890.1 hypothetical protein chr02_pseudomolecule_I...    60   7e-10

>IMGA|Medtr1g129340.1 Dihydrodipicolinate reductase
           chr01_pseudomolecule_IMGAG_V3 28859770-28857293 E
           EGN_Mt090430 20090702
          Length = 302

 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/252 (81%), Positives = 223/252 (88%), Gaps = 4/252 (1%)

Query: 1   MAALSCYFQFTINRSSQKVKSKP---FIYCSTQPVQSNIKVVVNGAAKEIGRAAVIAVSK 57
           MAALSC F      +SQ VKS+     I CS QP+QSNIKVV+NGAAKEIGRAAV+AV+K
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAVDTHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVIDFTDPS 117
           ARGMEVAGA+DT  VGEDIG+LC M+EPLEIPI+NDLTMVLGSISQSK T VV+DFTDPS
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMKSIVYVPRIKLDTIAALSALCDKASMGCLVAPTLSIGSILLQQAAI 177
            VYDNVKQATAFGMKS+VYVPRIKLDT+AALSA C+KASMG LVAPTLSIGSILLQQAAI
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAI 180

Query: 178 SASFHYNNVEIVESRAQAADLPSADAFQIAKNLSNLGQIYNREDSSTDVLARGQVLGEDG 237
           SASFHY NVEIVES+A A DLPSA+A QIA NLSNLGQIYNREDSSTDVLARGQVLG DG
Sbjct: 181 SASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQVLG-DG 239

Query: 238 VRVHSLVLPGLP 249
           +RVHSLVLPGLP
Sbjct: 240 IRVHSLVLPGLP 251


>IMGA|Medtr1g129340.2 Dihydrodipicolinate reductase, bacterial
           chr01_pseudomolecule_IMGAG_V3 28859770-28857293 E
           EGN_Mt090430 20090702
          Length = 173

 Score =  252 bits (643), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 138/160 (86%), Gaps = 3/160 (1%)

Query: 1   MAALSCYFQFTINRSSQKVKSKP---FIYCSTQPVQSNIKVVVNGAAKEIGRAAVIAVSK 57
           MAALSC F      +SQ VKS+     I CS QP+QSNIKVV+NGAAKEIGRAAV+AV+K
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAVDTHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVIDFTDPS 117
           ARGMEVAGA+DT  VGEDIG+LC M+EPLEIPI+NDLTMVLGSISQSK T VV+DFTDPS
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMKSIVYVPRIKLDTIAALSALCDKASM 157
            VYDNVKQATAFGMKS+VYVPRIKLDT+AALSA C+KASM
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASM 160


>IMGA|Medtr2g026890.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 7409477-7409184 H
           EGN_Mt090430 20090702
          Length = 65

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 44/69 (63%), Gaps = 7/69 (10%)

Query: 40  VNGAAKEIGRAAVIAV--SKARGMEVAGAVDT-HFVGEDIGKLCDMEEPLEIPIINDLTM 96
           +N AAK+  R AV+ V  SKA+GMEVA AVDT HF     G    ME PLEIPI+ND TM
Sbjct: 1   MNEAAKKKEREAVVTVTVSKAQGMEVAAAVDTYHFSSRFDG----MENPLEIPILNDFTM 56

Query: 97  VLGSISQSK 105
           V    S+ K
Sbjct: 57  VFFIQSRKK 65