Jatropha Genome Database
- JcCA0241941.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0241941.10 + phase: 1 /TE/partial
(929 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 74 4e-13
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 62 1e-09
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 59 9e-09
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 58 3e-08
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 57 4e-08
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 57 5e-08
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 55 1e-07
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 53 6e-07
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 51 2e-06
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 51 2e-06
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 116/278 (41%), Gaps = 61/278 (21%)
Query: 624 LLYVVDMLIVGQNSVRINSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQEKY 683
L+YV D++I G ++ I + K+ L + F +KDLGP K LG+++ R A L + Q KY
Sbjct: 4 LIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARG--ANGLFMCQRKY 61
Query: 684 IVKVLQRFRMGNAKAISCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAMVCT 743
+ +L +M + K + P+ + KL + P+ + + L+Y +
Sbjct: 62 TLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRR------LISRLIYLTIMH 115
Query: 744 LPDIAHSVGVV--------------------------------------------SQFLS 759
P+I +SV ++ S +L
Sbjct: 116 -PEITYSVHILTMRVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRSTSGYLM 174
Query: 760 NLGKEYWTAVKWIFRISNHICRGSRVVAVK-ITEACKQLLWIKKFLNELGIHQERYRI-F 817
LG + W + + + + S + + +A +++W++ L+ L +H + +
Sbjct: 175 KLGS---APISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPTVLL 231
Query: 818 CDSQNAIHLGKNSSFHSITRSGMCWRXSCYSLRRSIQE 855
CD+Q A+HL N +H T+ C+ +R +QE
Sbjct: 232 CDNQAAMHLAANPVYHERTKH---IEVDCHFIRTHLQE 266
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 623 FLLYVVDMLIVGQNSVRINSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQEK 682
++YV DM++ G N+ + L L+ +F LKDLG K LG+++ + + LL++Q K
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEV-KPQSNGSLLITQSK 59
Query: 683 YIVKVLQRFRMGNAKAISCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYA 739
Y+ +L + M AK++ P+ + KLS DG + L S V L YA
Sbjct: 60 YVRDLLAKTDMQEAKSLPSPMISDLKLSK------DGSTPFSDPTLCRSIVRALQYA 110
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 625 LYVVDMLIVGQNSVRINSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQEKYI 684
+YV D+L+ G ++ I+ LK+ L F +KDLG LG+++ + +L+SQ K++
Sbjct: 527 VYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVL--YKDDGILVSQRKFV 584
Query: 685 VKVLQRFRMGNAKAISCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAMVCTL 744
+ +L+ F + +S PL + KL S + D ++ +G L + + T
Sbjct: 585 LDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRK------LIGKLNF-LTHTR 637
Query: 745 PDIAHSVGVVSQFLSNLGKEYWTAVKWIFR 774
D+A+ V ++SQ++ + + + A + R
Sbjct: 638 LDLAYGVQLLSQYMQDPREPHLHAAFHMLR 667
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 614 RNSLMMTTLFLLYVVDMLIVGQNSVRINSLKKQLSKSFVLKDLGPAKQILGMKITRDRRA 673
++S T L+YV D+++ G + +K L SF +KDLG K LG+++ +
Sbjct: 414 KHSTTQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLGLEVAHSKLG 473
Query: 674 KKLLLSQEKYIVKVLQRFRMGNAKAISCPLTNHFKLSSKQCP-STDGEKEEKEKVLXASA 732
+ L Q KY + +L + ++K ++ P KL P TD +
Sbjct: 474 --ISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSPLYTDIPAYRR-------L 524
Query: 733 VGNLMYAMVCTLPDIAHSVGVVSQFLSNLGKEYWTAVKWIFR 774
VG L+Y + T PDI +SQFLS + ++ A + R
Sbjct: 525 VGRLLY-LNATRPDITFITQQLSQFLSKPTQTHYNAALRVLR 565
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Query: 589 GTRSLSLLWASKATERLLQ---------ITMFLXRNSLMMTTLFLLYVVDMLIVGQNSVR 639
G + S W K T L+Q ++F+ ++S T L L+YV D+++ G + +
Sbjct: 886 GLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTIL-LVYVDDIILAGTSLLE 944
Query: 640 INSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQEKYIVKVLQRFRMGNAKAI 699
++K L SF +KDLG K LG+++ + + L Q KY + +L +K I
Sbjct: 945 FQNIKSILDTSFKIKDLGQLKYFLGIEVAHSKLG--ISLYQRKYCLDLLHDSGHIGSKPI 1002
Query: 700 SCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAMVCTLPDIAHSVGVVSQFLS 759
S P KL D + VG L+Y + T PDI +SQFLS
Sbjct: 1003 STPSDPSTKLHHDTSTPYDDIPAYRR------LVGRLLY-LNNTRPDITFITQQLSQFLS 1055
Query: 760 N 760
N
Sbjct: 1056 N 1056
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 621 TLFLLYVVDMLIVGQNSVRINSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQ 680
T+ L+YV D+++ G + +K L SF +KDLG K +LG+++ ++ + L Q
Sbjct: 11 TILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHSKQG--ISLCQ 68
Query: 681 EKYIVKVLQRFRMGNAKAISCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAM 740
KY + +L N+K +S KL + P + + +G L+Y +
Sbjct: 69 RKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRR------LIGRLLY-L 121
Query: 741 VCTLPDIAHSVGVVSQFLSNLGKEYWTAV 769
T PDI +SQFLS + + A
Sbjct: 122 NSTRPDITFITQQLSQFLSKPTQTHHNAA 150
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 10/176 (5%)
Query: 594 SLLWASKATERLLQITMFLXRNSLMMTTLFLLYVVDMLIVGQNSVRINSLKKQLSKSFVL 653
S+L+ T+ ++F+ + S T L L+YV D+++ G + + +K L F +
Sbjct: 1054 SVLFDQHYTQATSDYSLFVKKTSTSFTVL-LVYVDDIILAGNSISEFSHIKSILDSLFKI 1112
Query: 654 KDLGPAKQILGMKITRDRRAKKLLLSQEKYIVKVLQRFRMGNAKAISCPLTNHFKLSSKQ 713
KDLG K LG+++ + + L Q KY + +L +K IS P + KL
Sbjct: 1113 KDLGQLKYFLGIEVAHSKLG--ISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKL---- 1166
Query: 714 CPSTDGEKEEKEKVLXASAVGNLMYAMVCTLPDIAHSVGVVSQFLSNLGKEYWTAV 769
D ++ VG L+Y + T PDI +SQFLS + + +A
Sbjct: 1167 --HLDSSSPFEDVPACRRLVGRLLY-LNNTRPDITFITQQLSQFLSQPTQAHHSAA 1219
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 19/170 (11%)
Query: 589 GTRSLSLLWASKATERLL---------QITMFLXRNSLMMTTLFLLYVVDMLIVGQNSVR 639
G + S+ W K T L+ ++F+ +++ T+ L+YV D+++ G
Sbjct: 132 GLQQASMKWYEKLTNILISTGYKQAASDASLFI-KHTHSSFTILLVYVDDVILAGDTLSE 190
Query: 640 INSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQEKYIVKVLQRFRMGNAKAI 699
N++K L +F +KD+G K LG+++ + + L Q KY + +L+ + +K +
Sbjct: 191 FNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSG--ISLCQRKYCLDLLEDSGLTGSKPM 248
Query: 700 SCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAMVCTLPDIAH 749
+ P KL + PS + +G L+Y + T PDI +
Sbjct: 249 NTPSDPSIKLHNDSAPSFPDIPAYRR------LIGRLLY-LNTTRPDITY 291
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 621 TLFLLYVVDMLIVGQNSVRINSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQ 680
T L+YV D++I G + +K L + +KDLG K LG+++ ++ + L Q
Sbjct: 1071 TALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVA--HSSQGISLCQ 1128
Query: 681 EKYIVKVLQRFRMGNAKAISCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAM 740
KY + +L AK S P KL + P + +G L+Y +
Sbjct: 1129 RKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRR------LIGRLIY-L 1181
Query: 741 VCTLPDIAHSVGVVSQFLSNLGKEYWTAVKWIFR 774
T P I + +SQFL++ ++++ A I R
Sbjct: 1182 TNTRPYITFATQQLSQFLNSPTEKHYIAATRILR 1215
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 17/194 (8%)
Query: 589 GTRSLSLLWASKATERLL--QITMFLXRNSLMMT------TLFLLYVVDMLIVGQNSVRI 640
G + S W K T LL Q T +SL T+ L+YV D+++ G +
Sbjct: 1014 GLKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEF 1073
Query: 641 NSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQEKYIVKVLQRFRMGNAKAIS 700
+K L F +KDLG K LG+++ + + L Q+KY + +L +K S
Sbjct: 1074 QYIKSILDTLFKIKDLGQLKFFLGLEVAHSQLG--ISLCQKKYCLDLLADSGTIGSKPAS 1131
Query: 701 CPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAMVCTLPDIAHSVGVVSQFLSN 760
P KL DG ++ +G L+Y + T PDI + +SQFLS
Sbjct: 1132 TPSDPSLKLHK------DGALPYEDIPSYRRLIGRLLY-LNTTRPDITYITQQLSQFLSA 1184
Query: 761 LGKEYWTAVKWIFR 774
+ +A + R
Sbjct: 1185 PTHTHHSAALRVLR 1198