Jatropha Genome Database

JcCA0241461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0241461.10 + phase: 0 /partial
         (275 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160420.1 tRNA synthetase, class II (D, K and N); S15...   365   e-102
IMGA|Medtr7g121310.1 Aminoacyl-transfer RNA synthetase, class II...   331   3e-91
IMGA|Medtr4g160670.1 Aspartyl-tRNA synthetase, class IIb chr04_p...   317   4e-87
IMGA|Medtr8g105750.1 Aspartyl-tRNA synthetase bacterial/mitochon...   175   2e-44
IMGA|Medtr8g011980.1 tRNA synthetase, class II (D, K and N) chr0...   166   1e-41

>IMGA|Medtr4g160420.1 tRNA synthetase, class II (D, K and N);
           S15/NS1, RNA-binding chr04_pseudomolecule_IMGAG_V3
           40657904-40652732 E EGN_Mt090430 20090702
          Length = 551

 Score =  365 bits (938), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/265 (66%), Positives = 203/265 (76%)

Query: 11  KHPFSDRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCSANLQ 70
           K  FSD V I+SI+ R DGG+GL G++ RIGGWVKTGR+  K +FAFLELNDGSC+ NLQ
Sbjct: 7   KAEFSDSVLIKSIIRREDGGSGLAGKKARIGGWVKTGRKADKDAFAFLELNDGSCAGNLQ 66

Query: 71  VIVEKEVADLSPLVHTGACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPVDPAKYPIPKT 130
           VI++  +ADL  LV TG CV VEG LK PP G KQKIELR E+VLHVGPVDPAKYP+PKT
Sbjct: 67  VIIDASLADLGQLVQTGTCVVVEGHLKLPPSGAKQKIELRAEEVLHVGPVDPAKYPLPKT 126

Query: 131 KLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGAG 190
           +LTLE LRD +H R RTNTISAVARIRNALA+ATH+FF +HGFLYVHTPI+TTSDCEGAG
Sbjct: 127 RLTLESLRDFVHLRSRTNTISAVARIRNALAYATHTFFNKHGFLYVHTPIVTTSDCEGAG 186

Query: 191 EMFQVTTXXXXXXXXXXXXXQNPPPSEAEIEAAKLVVKERGEAVAQLXXXXXXXXXXXXX 250
           EMFQVTT             QNPPP+EA++EAAKLVV+E+GE V+QL             
Sbjct: 187 EMFQVTTLFSEAERLEKELIQNPPPTEADVEAAKLVVQEKGEVVSQLKSAKADKKEISAA 246

Query: 251 XXXLTTAKENVSRLVERSKLKPGIP 275
              L  AKENVS+L ERSKL+PGIP
Sbjct: 247 VAELKKAKENVSKLEERSKLQPGIP 271


>IMGA|Medtr7g121310.1 Aminoacyl-transfer RNA synthetase, class II
           chr07_pseudomolecule_IMGAG_V3 28534222-28537955 E
           EGN_Mt090430 20090702
          Length = 603

 Score =  331 bits (848), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/298 (57%), Positives = 201/298 (67%), Gaps = 33/298 (11%)

Query: 11  KHPFSDRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCSANLQ 70
           K  FSDRVPI+SI+ R DGG+GL G++ RIGGWVKTGR+  K +FAFL+LNDG+C+ NLQ
Sbjct: 24  KAEFSDRVPIQSIIRREDGGSGLAGKKARIGGWVKTGRKADKDAFAFLQLNDGTCAGNLQ 83

Query: 71  VIVEKEVADLSPLVHTGACVSVEGVLKEPPEGTKQ--KIELRVEKVLHVGPVDPAKYPIP 128
           VIVE  +ADL  LV TG CV V+G LK PP G KQ  KIELR +KVLHVGPVDPAKYP+P
Sbjct: 84  VIVEASLADLGQLVLTGTCVVVDGYLKLPPSGEKQNKKIELRADKVLHVGPVDPAKYPLP 143

Query: 129 KTKLT----LEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTS 184
           K +LT    LEFLR+ +H R RTNTISAVARI NALA+ATH+FF +HGFLYV TPI+TTS
Sbjct: 144 KLRLTPDKNLEFLRNFVHLRSRTNTISAVARIGNALAYATHTFFNKHGFLYVRTPIVTTS 203

Query: 185 DCEGAGEMFQVTTXXXXXXXXXXXXXQNPPPSEAEIEAAKLVVKERGEAVAQLXXXXX-- 242
           DCEGAGEMFQVTT             QNPPP+E+++EAAKLVV+E+GE V+QL       
Sbjct: 204 DCEGAGEMFQVTTLFSEAERLEKELIQNPPPTESDVEAAKLVVQEKGEVVSQLKTAEAER 263

Query: 243 -------------------------XXXXXXXXXXXLTTAKENVSRLVERSKLKPGIP 275
                                               L  AK NVS+L ERSKL+P IP
Sbjct: 264 LEKEQIQNPPPTESDVEAAKLVAQEKEKEITAAVDELKKAKRNVSKLEERSKLQPSIP 321


>IMGA|Medtr4g160670.1 Aspartyl-tRNA synthetase, class IIb
           chr04_pseudomolecule_IMGAG_V3 40763626-40761742 E
           EGN_Mt090430 20090702
          Length = 232

 Score =  317 bits (812), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/213 (69%), Positives = 171/213 (80%)

Query: 11  KHPFSDRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCSANLQ 70
           K  FSD V I+SI+ R DGG+GL G++ RIGGWVKTGR+  K +FAFLELNDGSC+ NLQ
Sbjct: 7   KAEFSDSVLIKSIIRREDGGSGLAGKKARIGGWVKTGRKADKDAFAFLELNDGSCAGNLQ 66

Query: 71  VIVEKEVADLSPLVHTGACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPVDPAKYPIPKT 130
           VI++  +ADL  LV TG CV VEG LK PP G KQKIELR E+VLHVGPVDPAKYP+PKT
Sbjct: 67  VIIDASLADLGQLVQTGTCVVVEGHLKLPPSGAKQKIELRAEEVLHVGPVDPAKYPLPKT 126

Query: 131 KLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGAG 190
           +LTLE LRD +H R RTNTISAVARIRNALA+ATH+FF +HGFLYVHTPI+TTSDCEGAG
Sbjct: 127 RLTLESLRDFVHLRSRTNTISAVARIRNALAYATHTFFNKHGFLYVHTPIVTTSDCEGAG 186

Query: 191 EMFQVTTXXXXXXXXXXXXXQNPPPSEAEIEAA 223
           EMFQVTT             QNPPP+EA++EAA
Sbjct: 187 EMFQVTTLFSEAERLEKELIQNPPPTEADVEAA 219


>IMGA|Medtr8g105750.1 Aspartyl-tRNA synthetase
           bacterial/mitochondrial type; Nucleic acid-binding,
           OB-fold, subgroup chr08_pseudomolecule_IMGAG_V3
           23433245-23426495 E EGN_Mt090430 20090702
          Length = 559

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 122/174 (70%), Gaps = 8/174 (4%)

Query: 28  DGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCSANLQVIVEKEVADL----SPL 83
           DG     G  + + GWV+T R Q   S  FLE+NDGSC +N+Q +++ EV       S L
Sbjct: 78  DGQFDSLGNTLVLQGWVRTLRLQS--SVTFLEINDGSCLSNMQCVLDTEVEGYDQVESGL 135

Query: 84  VHTGACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPVDPAKYPIPKTKLTLEFLRDRIHF 143
           + TGA V V+G++ +  +GTKQK+EL++ K++ VG  DP+ +PI K +++ EFLR + H 
Sbjct: 136 ITTGASVWVQGIVVKS-QGTKQKVELKLNKIVLVGKSDPS-FPIQKKRVSREFLRTKAHL 193

Query: 144 RPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGAGEMFQVTT 197
           R RTNT  AVAR+RNALA+ATH FFQE+GF++V +PIIT SDCEGAGE F VTT
Sbjct: 194 RARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTT 247


>IMGA|Medtr8g011980.1 tRNA synthetase, class II (D, K and N)
           chr08_pseudomolecule_IMGAG_V3 1764832-1761068 E
           EGN_Mt090430 20090702
          Length = 633

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 3/182 (1%)

Query: 17  RVP-IRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCSANLQVIVEK 75
           R+P IR+I+    G + +  +++R     +T     K S  +L L DGS  A LQV+V+ 
Sbjct: 100 RIPLIRNIMEVLGGSSYVSRKKLRDSPIPRTL--PPKSSTVYLLLTDGSSVATLQVVVDS 157

Query: 76  EVADLSPLVHTGACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPVDPAKYPIPKTKLTLE 135
            +   S L+ TG C+ VEG+L+ P    K  I+L+ +KVLH+G VD  KYP+ K ++ L+
Sbjct: 158 SITTPSLLLPTGTCILVEGLLERPATEGKHAIQLKADKVLHIGTVDIGKYPLSKKRVPLD 217

Query: 136 FLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGAGEMFQV 195
            LRD  HFRPRT T++ V R+R+AL+FATHSFF+EH F  V  P ITT+DCEG G MFQV
Sbjct: 218 ALRDFSHFRPRTTTVATVMRVRSALSFATHSFFKEHAFFDVQVPTITTTDCEGFGNMFQV 277

Query: 196 TT 197
           TT
Sbjct: 278 TT 279