Jatropha Genome Database

JcCA0240711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0240711.10 - phase: 0 /partial
         (126 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g042850.1 Malate dehydrogenase, active site chr01_pse...   237   1e-63
IMGA|Medtr8g005780.1 Malate dehydrogenase, active site chr08_pse...   172   4e-44
IMGA|Medtr7g037760.1 Lactate/malate dehydrogenase chr07_pseudomo...    74   3e-14
IMGA|AC235664_2.1 Malate dehydrogenase, active site AC235664.1 6...    47   2e-06
IMGA|AC235664_2.2 Malate dehydrogenase, active site AC235664.1 6...    47   2e-06
IMGA|AC235664_2.3 Malate dehydrogenase, active site AC235664.1 6...    47   2e-06

>IMGA|Medtr1g042850.1 Malate dehydrogenase, active site
           chr01_pseudomolecule_IMGAG_V3 9957754-9962850 E
           EGN_Mt090430 20090702
          Length = 332

 Score =  237 bits (604), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/126 (89%), Positives = 122/126 (96%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA  P+RVLVTGAAGQIGYA+VPMIARGVMLGPDQPVILHMLDI PAAE+LNGVKME++D
Sbjct: 1   MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVD 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLLKGV+ATTDVVEAC GVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEKH
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120

Query: 121 AAADCK 126
           AAA+CK
Sbjct: 121 AAANCK 126


>IMGA|Medtr8g005780.1 Malate dehydrogenase, active site
           chr08_pseudomolecule_IMGAG_V3 440550-443912 E
           EGN_Mt090430 20090702
          Length = 354

 Score =  172 bits (436), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 97/122 (79%), Gaps = 16/122 (13%)

Query: 5   PLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMIDAAFP 64
           P+ VLVTG   QIGYA+VPMIARG+MLGP+QPVILHMLDIEPA EAL G           
Sbjct: 44  PVTVLVTG---QIGYALVPMIARGMMLGPNQPVILHMLDIEPALEALKGA---------- 90

Query: 65  LLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAAD 124
               V+ATTDVVEAC  VN+AVMVGGFPRKEGMERKDVMSKNVSIYK QASALE+HAAA 
Sbjct: 91  ---CVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKTQASALEEHAAAY 147

Query: 125 CK 126
           CK
Sbjct: 148 CK 149


>IMGA|Medtr7g037760.1 Lactate/malate dehydrogenase
          chr07_pseudomolecule_IMGAG_V3 9114057-9113560 H
          EGN_Mt090430 20090702
          Length = 165

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 39/46 (84%)

Query: 15 GQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
          GQIG A+ PMIARG+MLG +Q VILHMLDIEP  EAL GVKME+ID
Sbjct: 24 GQIGDALAPMIARGMMLGTNQHVILHMLDIEPTLEALKGVKMELID 69


>IMGA|AC235664_2.1 Malate dehydrogenase, active site AC235664.1
           6223-4689 E EGN_Mt090430 20090702
          Length = 264

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 56  MEMIDAAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
           ME+ D+ FPLL+ VI + D  E     + A+++G  PR  G+ER  ++  N  I+  Q  
Sbjct: 1   MELEDSLFPLLREVIISIDPYEVFQDADWALLIGAKPRGPGVERAALLDINGQIFAEQGK 60

Query: 116 ALEKHAAADCK 126
           AL   A+ + K
Sbjct: 61  ALNAVASRNVK 71


>IMGA|AC235664_2.2 Malate dehydrogenase, active site AC235664.1
           6223-3733 E EGN_Mt090430 20090702
          Length = 239

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 56  MEMIDAAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
           ME+ D+ FPLL+ VI + D  E     + A+++G  PR  G+ER  ++  N  I+  Q  
Sbjct: 1   MELEDSLFPLLREVIISIDPYEVFQDADWALLIGAKPRGPGVERAALLDINGQIFAEQGK 60

Query: 116 ALEKHAAADCK 126
           AL   A+ + K
Sbjct: 61  ALNAVASRNVK 71


>IMGA|AC235664_2.3 Malate dehydrogenase, active site AC235664.1
           6223-3733 E EGN_Mt090430 20090702
          Length = 295

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 56  MEMIDAAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
           ME+ D+ FPLL+ VI + D  E     + A+++G  PR  G+ER  ++  N  I+  Q  
Sbjct: 1   MELEDSLFPLLREVIISIDPYEVFQDADWALLIGAKPRGPGVERAALLDINGQIFAEQGK 60

Query: 116 ALEKHAAADCK 126
           AL   A+ + K
Sbjct: 61  ALNAVASRNVK 71