Jatropha Genome Database

JcCA0240561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0240561.10 - phase: 1 /partial
         (416 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g162670.1 Thymidylate synthase chr03_pseudomolecule_I...   565   e-161
IMGA|Medtr3g162670.2 Thymidylate synthase chr03_pseudomolecule_I...   564   e-161
IMGA|Medtr4g096210.1 Thymidylate synthase chr04_pseudomolecule_I...   528   e-150
IMGA|Medtr3g162670.3 Bifunctional dihydrofolate reductase/thymid...   489   e-138
IMGA|Medtr3g162670.4 Bifunctional dihydrofolate reductase/thymid...   487   e-138

>IMGA|Medtr3g162670.1 Thymidylate synthase
           chr03_pseudomolecule_IMGAG_V3 42524537-42519915 E
           EGN_Mt090430 20090702
          Length = 582

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 279/418 (66%), Positives = 330/418 (78%), Gaps = 12/418 (2%)

Query: 5   IALLFQVLKNFCKSWVYTVSSEVPSSNFCLAFFSN-MAGDSKASLSNGTANIQSDPRRTY 63
           IAL FQ  KN+  S  +  +    S + C  F S+ MAGDS A + NG  N   + +RTY
Sbjct: 23  IALHFQ--KNWLCSPYFHPNQ---SLSLCRRFLSSTMAGDSSA-IFNGNGNGSINLQRTY 76

Query: 64  QVVVAATRDMGIGKEGKLPWRLPSDLKFFKDVTLTTSDSGRKNAVIMGRKTWESIPLEHR 123
           QVVVAAT++MGIGK+GKLPWRLP+DLKFFK++T TTS+ G+KNA++MGRKTWESIPL+ R
Sbjct: 77  QVVVAATKEMGIGKDGKLPWRLPTDLKFFKEITTTTSEPGKKNAIVMGRKTWESIPLQFR 136

Query: 124 PLPGRLNVVLTRSGSFDIATAENVVICGXXXXXXXXXXXXPYCLSIEKVFIIGGGQILRE 183
           PL GRLNVVLTRSG+FDIA AENVVIC             PY  SIEK+F+IGGG+I RE
Sbjct: 137 PLLGRLNVVLTRSGTFDIAAAENVVICRSMSSALELLAASPYHTSIEKIFVIGGGEIFRE 196

Query: 184 SLNAPGCDAIHITEIETSIDCDTFIPKIDSSVFQPWYSSFPIVENNVRYCFATYVRVRVS 243
           +LNAP C+AIH+TEI+++I+CDTF+P ID+++FQPWYSSF  VENN+RY F TYVRVR S
Sbjct: 197 ALNAPECEAIHLTEIQSNIECDTFMPPIDTTIFQPWYSSFTKVENNIRYSFTTYVRVRSS 256

Query: 244 AVE-SHGQDNGLSSDNSYIKFEVKKFSFLPKMVFERHEEFLYLRLVQDIISDGNLKDDRT 302
           A E     D+   S+++  KFEV+ FSFLPKM+FERH E++YL LVQ+IIS G  K DRT
Sbjct: 257 AAEYPKNTDSFFDSNSASKKFEVQNFSFLPKMIFERHAEYMYLNLVQEIISQGTTKGDRT 316

Query: 303 GTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVVEELLWFISGSTNCKVLQEKGIHIWDG 362
           GTGTLS FGCQMRFNLRR FPLLTTK+VFWRGVVEELLWFISGSTN KVLQ+KGIHIWD 
Sbjct: 317 GTGTLSAFGCQMRFNLRRGFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQQKGIHIWDD 376

Query: 363 NASRDYLDG----IGLKDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVI 416
           NASR++LD     IGL +REEGDLGPVYGFQWRHFGA+YT+MH DY  QG DQLLDVI
Sbjct: 377 NASREFLDRRACFIGLSEREEGDLGPVYGFQWRHFGAKYTNMHGDYANQGLDQLLDVI 434


>IMGA|Medtr3g162670.2 Thymidylate synthase
           chr03_pseudomolecule_IMGAG_V3 42524537-42519915 E
           EGN_Mt090430 20090702
          Length = 517

 Score =  564 bits (1453), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/419 (66%), Positives = 329/419 (78%), Gaps = 14/419 (3%)

Query: 5   IALLFQVLKNFCKSWVYTVSSEVPSS-NFCLAFFSN-MAGDSKASLSNGTANIQSDPRRT 62
           IAL FQ      K+W+ +       S + C  F S+ MAGDS A + NG  N   + +RT
Sbjct: 23  IALHFQ------KNWLCSPYFHPNQSLSLCRRFLSSTMAGDSSA-IFNGNGNGSINLQRT 75

Query: 63  YQVVVAATRDMGIGKEGKLPWRLPSDLKFFKDVTLTTSDSGRKNAVIMGRKTWESIPLEH 122
           YQVVVAAT++MGIGK+GKLPWRLP+DLKFFK++T TTS+ G+KNA++MGRKTWESIPL+ 
Sbjct: 76  YQVVVAATKEMGIGKDGKLPWRLPTDLKFFKEITTTTSEPGKKNAIVMGRKTWESIPLQF 135

Query: 123 RPLPGRLNVVLTRSGSFDIATAENVVICGXXXXXXXXXXXXPYCLSIEKVFIIGGGQILR 182
           RPL GRLNVVLTRSG+FDIA AENVVIC             PY  SIEK+F+IGGG+I R
Sbjct: 136 RPLLGRLNVVLTRSGTFDIAAAENVVICRSMSSALELLAASPYHTSIEKIFVIGGGEIFR 195

Query: 183 ESLNAPGCDAIHITEIETSIDCDTFIPKIDSSVFQPWYSSFPIVENNVRYCFATYVRVRV 242
           E+LNAP C+AIH+TEI+++I+CDTF+P ID+++FQPWYSSF  VENN+RY F TYVRVR 
Sbjct: 196 EALNAPECEAIHLTEIQSNIECDTFMPPIDTTIFQPWYSSFTKVENNIRYSFTTYVRVRS 255

Query: 243 SAVE-SHGQDNGLSSDNSYIKFEVKKFSFLPKMVFERHEEFLYLRLVQDIISDGNLKDDR 301
           SA E     D+   S+++  KFEV+ FSFLPKM+FERH E++YL LVQ+IIS G  K DR
Sbjct: 256 SAAEYPKNTDSFFDSNSASKKFEVQNFSFLPKMIFERHAEYMYLNLVQEIISQGTTKGDR 315

Query: 302 TGTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVVEELLWFISGSTNCKVLQEKGIHIWD 361
           TGTGTLS FGCQMRFNLRR FPLLTTK+VFWRGVVEELLWFISGSTN KVLQ+KGIHIWD
Sbjct: 316 TGTGTLSAFGCQMRFNLRRGFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQQKGIHIWD 375

Query: 362 GNASRDYLDG----IGLKDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVI 416
            NASR++LD     IGL +REEGDLGPVYGFQWRHFGA+YT+MH DY  QG DQLLDVI
Sbjct: 376 DNASREFLDRRACFIGLSEREEGDLGPVYGFQWRHFGAKYTNMHGDYANQGLDQLLDVI 434


>IMGA|Medtr4g096210.1 Thymidylate synthase
           chr04_pseudomolecule_IMGAG_V3 20179513-20174873 E
           EGN_Mt090430 20090702
          Length = 524

 Score =  528 bits (1361), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/380 (66%), Positives = 303/380 (79%), Gaps = 7/380 (1%)

Query: 40  MAGDSKASLS-NGTANIQSDPRRTYQVVVAATRDMGIGKEGKLPWRLPSDLKFFKDVTLT 98
           MA DS   ++ NG  N + +P+RTYQVVV ATRDMGI K+GKLPW LP D KFF+D+T  
Sbjct: 1   MASDSSVIINGNGNHNSEPNPQRTYQVVVIATRDMGIAKDGKLPWTLPIDQKFFEDITTV 60

Query: 99  TSDSGRKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGXXXXXXX 158
           TSD G+KNAV+MGRK+WE+IP E+RPL GRLN++LTRSGSF+IATA+NV+ICG       
Sbjct: 61  TSDPGKKNAVVMGRKSWEAIPPENRPLRGRLNIILTRSGSFEIATADNVLICGSVSSAME 120

Query: 159 XXXXXPYCLSIEKVFIIGGGQILRESLNAPGCDAIHITEIETSIDCDTFIPKIDSSVFQP 218
                PYC SIEKVF+ GG +I RE+L+APGC+AIHITEIE SI+CDTF+P+ID SVF P
Sbjct: 121 LLASSPYCQSIEKVFLTGGAEIFREALHAPGCEAIHITEIEASIECDTFMPRIDFSVFHP 180

Query: 219 WYSSFPIVENNVRYCFATYVRVRVSAVESHG--QDNGLSSDNSYIKFEVKKFSFLPKMVF 276
           WY+SFP+VEN +RY F TYVRVR S  ES G   D  L  +++ +KFE+K F+FLPK++F
Sbjct: 181 WYTSFPLVENGIRYSFNTYVRVRSSTEESQGLNTDPVLYDNSNPLKFEIKDFTFLPKIIF 240

Query: 277 ERHEEFLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVV 336
           ERHEE+ YL+LV++IIS+G +KDDRTGTGTLSKFG +MRFNLRR+FPLLTTK+VFWRGVV
Sbjct: 241 ERHEEYKYLKLVEEIISEGTVKDDRTGTGTLSKFGSKMRFNLRRSFPLLTTKRVFWRGVV 300

Query: 337 EELLWFISGSTNCKVLQEKGIHIWDGNASRDYLDGIGLKDREEGDLGPVYGFQWRHFGAR 396
           EELLWFISGST+ KV     IH   G         IGLK+REE DLGPVYGFQWRHFGAR
Sbjct: 301 EELLWFISGSTSAKVT----IHTLAGMGQMLGNLSIGLKEREEADLGPVYGFQWRHFGAR 356

Query: 397 YTDMHADYTGQGFDQLLDVI 416
           YT+MH DY+GQGFDQLLDVI
Sbjct: 357 YTNMHDDYSGQGFDQLLDVI 376


>IMGA|Medtr3g162670.3 Bifunctional dihydrofolate
           reductase/thymidylate synthase
           chr03_pseudomolecule_IMGAG_V3 42526520-42519915 E
           EGN_Mt090430 20090702
          Length = 389

 Score =  489 bits (1258), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/369 (65%), Positives = 289/369 (78%), Gaps = 10/369 (2%)

Query: 5   IALLFQVLKN-FCKSWVYTVSSEVPSSNFCLAFFSN-MAGDSKASLSNGTANIQSDPRRT 62
           IAL FQ  KN  C  + +   S     + C  F S+ MAGDS A + NG  N   + +RT
Sbjct: 14  IALHFQ--KNWLCSPYFHPNQS----LSLCRRFLSSTMAGDSSA-IFNGNGNGSINLQRT 66

Query: 63  YQVVVAATRDMGIGKEGKLPWRLPSDLKFFKDVTLTTSDSGRKNAVIMGRKTWESIPLEH 122
           YQVVVAAT++MGIGK+GKLPWRLP+DLKFFK++T TTS+ G+KNA++MGRKTWESIPL+ 
Sbjct: 67  YQVVVAATKEMGIGKDGKLPWRLPTDLKFFKEITTTTSEPGKKNAIVMGRKTWESIPLQF 126

Query: 123 RPLPGRLNVVLTRSGSFDIATAENVVICGXXXXXXXXXXXXPYCLSIEKVFIIGGGQILR 182
           RPL GRLNVVLTRSG+FDIA AENVVIC             PY  SIEK+F+IGGG+I R
Sbjct: 127 RPLLGRLNVVLTRSGTFDIAAAENVVICRSMSSALELLAASPYHTSIEKIFVIGGGEIFR 186

Query: 183 ESLNAPGCDAIHITEIETSIDCDTFIPKIDSSVFQPWYSSFPIVENNVRYCFATYVRVRV 242
           E+LNAP C+AIH+TEI+++I+CDTF+P ID+++FQPWYSSF  VENN+RY F TYVRVR 
Sbjct: 187 EALNAPECEAIHLTEIQSNIECDTFMPPIDTTIFQPWYSSFTKVENNIRYSFTTYVRVRS 246

Query: 243 SAVE-SHGQDNGLSSDNSYIKFEVKKFSFLPKMVFERHEEFLYLRLVQDIISDGNLKDDR 301
           SA E     D+   S+++  KFEV+ FSFLPKM+FERH E++YL LVQ+IIS G  K DR
Sbjct: 247 SAAEYPKNTDSFFDSNSASKKFEVQNFSFLPKMIFERHAEYMYLNLVQEIISQGTTKGDR 306

Query: 302 TGTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVVEELLWFISGSTNCKVLQEKGIHIWD 361
           TGTGTLS FGCQMRFNLRR FPLLTTK+VFWRGVVEELLWFISGSTN KVLQ+KGIHIWD
Sbjct: 307 TGTGTLSAFGCQMRFNLRRGFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQQKGIHIWD 366

Query: 362 GNASRDYLD 370
            NASR++LD
Sbjct: 367 DNASREFLD 375


>IMGA|Medtr3g162670.4 Bifunctional dihydrofolate
           reductase/thymidylate synthase
           chr03_pseudomolecule_IMGAG_V3 42526520-42519915 E
           EGN_Mt090430 20090702
          Length = 345

 Score =  487 bits (1253), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/332 (69%), Positives = 273/332 (82%), Gaps = 2/332 (0%)

Query: 40  MAGDSKASLSNGTANIQSDPRRTYQVVVAATRDMGIGKEGKLPWRLPSDLKFFKDVTLTT 99
           MAGDS A + NG  N   + +RTYQVVVAAT++MGIGK+GKLPWRLP+DLKFFK++T TT
Sbjct: 1   MAGDSSA-IFNGNGNGSINLQRTYQVVVAATKEMGIGKDGKLPWRLPTDLKFFKEITTTT 59

Query: 100 SDSGRKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGXXXXXXXX 159
           S+ G+KNA++MGRKTWESIPL+ RPL GRLNVVLTRSG+FDIA AENVVIC         
Sbjct: 60  SEPGKKNAIVMGRKTWESIPLQFRPLLGRLNVVLTRSGTFDIAAAENVVICRSMSSALEL 119

Query: 160 XXXXPYCLSIEKVFIIGGGQILRESLNAPGCDAIHITEIETSIDCDTFIPKIDSSVFQPW 219
               PY  SIEK+F+IGGG+I RE+LNAP C+AIH+TEI+++I+CDTF+P ID+++FQPW
Sbjct: 120 LAASPYHTSIEKIFVIGGGEIFREALNAPECEAIHLTEIQSNIECDTFMPPIDTTIFQPW 179

Query: 220 YSSFPIVENNVRYCFATYVRVRVSAVE-SHGQDNGLSSDNSYIKFEVKKFSFLPKMVFER 278
           YSSF  VENN+RY F TYVRVR SA E     D+   S+++  KFEV+ FSFLPKM+FER
Sbjct: 180 YSSFTKVENNIRYSFTTYVRVRSSAAEYPKNTDSFFDSNSASKKFEVQNFSFLPKMIFER 239

Query: 279 HEEFLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVVEE 338
           H E++YL LVQ+IIS G  K DRTGTGTLS FGCQMRFNLRR FPLLTTK+VFWRGVVEE
Sbjct: 240 HAEYMYLNLVQEIISQGTTKGDRTGTGTLSAFGCQMRFNLRRGFPLLTTKRVFWRGVVEE 299

Query: 339 LLWFISGSTNCKVLQEKGIHIWDGNASRDYLD 370
           LLWFISGSTN KVLQ+KGIHIWD NASR++LD
Sbjct: 300 LLWFISGSTNAKVLQQKGIHIWDDNASREFLD 331