Jatropha Genome Database

JcCA0240381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0240381.10 - phase: 2 /TE
         (179 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f...    50   5e-07
IMGA|Medtr4g104330.1 hypothetical protein chr04_pseudomolecule_I...    49   1e-06
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po...    47   6e-06

>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
           CU179634.6 87152-89450 H EGN_Mt090430 20090702
          Length = 688

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 9   GGKRLIVCLCVNDLIYTGNGRFKIENFKRSMMLEFDMSDFRKLHYFLGIEIVQSAGRIIL 68
           G   + + + V+D++ TG    +I+  KR +  +F + D  +LHYFLG+E++     I++
Sbjct: 519 GASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKDDGILV 578

Query: 69  SRKKYLRVILGRFQRNCQKL 88
           S++K++  +L  F  NC  +
Sbjct: 579 SQRKFVLDLLKEF--NCDHM 596


>IMGA|Medtr4g104330.1 hypothetical protein
          chr04_pseudomolecule_IMGAG_V3 22711685-22712637 H
          EGN_Mt090430 20090702
          Length = 196

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 39/54 (72%)

Query: 19 VNDLIYTGNGRFKIENFKRSMMLEFDMSDFRKLHYFLGIEIVQSAGRIILSRKK 72
          ++DL+ TG+ + +IE FK  M  EF+M+D  KL YFLGI+ ++++  +++ ++K
Sbjct: 1  MDDLMVTGSNKAEIEEFKLRMKSEFEMTDLGKLAYFLGIKFMETSRALVMHQEK 54


>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
          polymerase chr05_pseudomolecule_IMGAG_V3
          33218578-33217607 H EGN_Mt090430 20090702
          Length = 309

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 13 LIVCLCVNDLIYTGNGRFKIENFKRSMMLEFDMSDFRKLHYFLGIEIVQSAGRIILSRKK 72
          + V + V+DL+  GN    I NFK+ +   F M D   L YFLG+E+ + A  + + ++K
Sbjct: 1  MAVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRK 60

Query: 73 YLRVIL 78
          Y   IL
Sbjct: 61 YTLDIL 66