Jatropha Genome Database
- JcCA0239311.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0239311.10 + phase: 0 /TE
(1286 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 484 e-136
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 474 e-133
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 444 e-124
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 418 e-117
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 338 8e-93
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 269 6e-72
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 261 1e-69
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 223 3e-58
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 210 5e-54
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 202 8e-52
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 202 1e-51
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 199 7e-51
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 186 7e-47
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 174 3e-43
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 167 3e-41
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 166 5e-41
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 166 7e-41
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 159 1e-38
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 158 2e-38
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 156 6e-38
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 156 8e-38
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 117 4e-26
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 115 1e-25
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 112 8e-25
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 107 3e-23
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 100 4e-21
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 91 5e-18
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 87 7e-17
IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule... 82 2e-15
IMGA|Medtr3g044270.1 Peptidase S8 and S53, subtilisin, kexin, se... 77 4e-14
IMGA|Medtr5g082240.1 Peptidase S8 and S53, subtilisin, kexin, se... 77 4e-14
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 76 1e-13
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 74 3e-13
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 73 9e-13
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 73 1e-12
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 72 2e-12
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 69 2e-11
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 69 2e-11
IMGA|Medtr4g104320.1 hypothetical protein chr04_pseudomolecule_I... 68 3e-11
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 68 3e-11
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 67 5e-11
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 67 8e-11
IMGA|Medtr1g076760.1 hypothetical protein chr01_pseudomolecule_I... 62 2e-09
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 61 4e-09
IMGA|Medtr4g104330.1 hypothetical protein chr04_pseudomolecule_I... 60 8e-09
IMGA|Medtr4g110620.1 polyprotein-like, related chr04_pseudomolec... 59 1e-08
IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related ... 57 9e-08
IMGA|Medtr5g089840.1 copia LTR rider, related chr05_pseudomolecu... 56 1e-07
IMGA|Medtr7g116810.1 hypothetical protein chr07_pseudomolecule_I... 54 4e-07
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 54 6e-07
IMGA|Medtr6g036460.1 hypothetical protein chr06_pseudomolecule_I... 53 1e-06
IMGA|Medtr6g036320.1 hypothetical protein chr06_pseudomolecule_I... 53 1e-06
IMGA|Medtr4g114890.1 gag-pol polyprotein, related chr04_pseudomo... 52 2e-06
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 52 2e-06
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 52 2e-06
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 52 2e-06
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 307/928 (33%), Positives = 478/928 (51%), Gaps = 87/928 (9%)
Query: 394 SKSGTLYSTGGASYFIAVAANSE----TPNIWHQRLGHMSMKGM-KILHSQGKLPGLQSI 448
S + ++S + F +++ NS +WH RLGH+S + M K+ H P +
Sbjct: 464 SSTSLMHSPNKSCNFSSISCNSNNCIPVAALWHFRLGHLSNQRMIKMSH---LYPSIVHN 520
Query: 449 EIDMCEDCIFGKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHS 508
D+C+ C F KQK + F ++ + EL+H D+WGP ++SS+ G YF+T +D+HS
Sbjct: 521 NRDVCDICHFSKQKHLPFSSSL-SHASTNFELLHFDIWGPISISSVHGHRYFLTILDDHS 579
Query: 509 RKVWVYFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKM 568
R +W+ LK KSEV K + M+ + + K +R+DNG E+ F HGI
Sbjct: 580 RFLWIILLKSKSEVSLHVKNFILMIRTQFHVTPKYVRSDNGPEF---LLNDFYSSHGIIH 636
Query: 569 ERTVPGTPQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEH 628
+++ TPQ NG ER ++ + R+L QS LP FW+ A+ A +LINR P+ L +
Sbjct: 637 QKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPSFWSYAILHAVFLINRVPTHVLHN 696
Query: 629 KIPEEVWSGKEVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDE 688
+ P V K L +++F ++KL P+++K +F+GY GY L+D
Sbjct: 697 QSPYHVLFHK---LPDIQLF------------KSKLQPRARKSLFLGYKSGYKGYHLFDL 741
Query: 689 ENKKVIRSRDVVFNERIM-YKNRHDTVASDSEQSGPVFVEVDDIPK---SLPNELVEDPQ 744
+++ SR V+F+E I+ Y + + P E P S P+ + Q
Sbjct: 742 STREIFVSRHVIFHENILPYTFTTSSTTPSWDYFSPSTTETSHSPNNTPSTPSASLPHTQ 801
Query: 745 SEESTDTPQTSPPKVLRSERPPK---------------PNRKYMNY-----------LLL 778
S + P R++ P P Y+++ L L
Sbjct: 802 SSSPSVPVSHLPRHSTRNKISPSYLQDYVCNSINSTTYPISHYLSHNKLSSHHSSYVLSL 861
Query: 779 TDGGEPECFEEACQTADASKWELAMKDEIKSLISNQTWELAELPVGKKALHNKWVYRVKE 838
EP+ + EA + W+ AM+ E+++L TW +LP K + +WV+++K
Sbjct: 862 HTHNEPKTYAEANK---HECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKR 918
Query: 839 EHDGS-------------KQKEGVDYTEIFAPVVKLNTIRSVLSIVASEGLYLEQLDVKT 885
DGS Q EG+DY + F+PV KL T+R ++++ + +L QLDV
Sbjct: 919 HADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNN 978
Query: 886 AFLHGDLDKEIYMYQPEGFSEKGKENMVCKLKKSLYGLKQAPRQWYRKFDGFMHREGFQR 945
AFLHGDL + +YM P G S K N VCKL KSLYGLKQA R+WY K + + + +
Sbjct: 979 AFLHGDLQENVYMTLPPGISAK-HSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQ 1037
Query: 946 CNADHCCYFKRFKTSYIILLLYVDDMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILG 1005
++DH + K+ TSY ILL+YVDD+++AG + E + +K L F +KDLG K LG
Sbjct: 1038 AHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLG 1097
Query: 1006 MQITRDKQKQVLQLSQAEYINRVLQRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDM 1065
+++ + + L Q +Y +L +KP STP +L KD + E+
Sbjct: 1098 LEVAHSQLG--ISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKDGALPYED----- 1150
Query: 1066 AKIP-YASAIGSLMYAMVCTRPDIGHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKC 1124
IP Y IG L+Y + TRPDI + +S+++S P TH A +LRYL+ K
Sbjct: 1151 --IPSYRRLIGRLLY-LNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKG 1207
Query: 1125 LYFGKGE-LKVQGYVDADYGGDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEY 1183
L+F + L++QGY DAD+ G +D RRS + F +G + + W ++ Q V+ S++EAEY
Sbjct: 1208 LFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEY 1267
Query: 1184 VAVTXASKEMIWLQGLLTELGFM-RKKNILYSDSQSAIHLAKNSTFHSRTKHIGLRYHFI 1242
A+ A+ E+ WL LL +L K +L+ D+QSA+H+A N FH RTKH+ + H +
Sbjct: 1268 RALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIV 1327
Query: 1243 RSLLENDVLKLEKIQGNKNPADMLTKAV 1270
R L + +LKL + + AD TK++
Sbjct: 1328 REKLHSGILKLLPVSSKEQVADFFTKSL 1355
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust.
Identities = 323/1057 (30%), Positives = 508/1057 (48%), Gaps = 114/1057 (10%)
Query: 293 WVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIKLNGST-----WE 347
W LDSGA+ H S +F K+ N +P N+ V ++ G+ +
Sbjct: 381 WFLDSGANEHIVSSTHWFT-----SFHKI---NPKPVNLPNGTSVLVEYAGTIHFTPHFY 432
Query: 348 LKDVRHIPDLRKNLISVGQLASDGYTTTFHGDNWKITKDAM---MVARGSKSGTLYSTGG 404
++DV + P NLIS+ ++ S + D +D M+ G + L
Sbjct: 433 IEDVLYSPSFTLNLISIFKVCSSLHCYASFHDKKCFLQDLHSQKMIGLGEQVRGL----- 487
Query: 405 ASYFIAVAANSETPNIWHQRLGHMSMKGMKILHSQGKLPGLQSIEIDMCEDCIFGKQKRV 464
LGH+S K + H P L C+ C F KQK++
Sbjct: 488 --------------------LGHVSNKRLN--HMSHLYPTLTVDNHATCDICQFAKQKKL 525
Query: 465 SFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVWVYFLKYKSEVFD 524
SF T+ K EL+H D+WGP V+SI YF+T +D++S W+ LK K EV
Sbjct: 526 SFPTSVSV-ASSKFELLHFDIWGPLAVTSIHNHRYFLTILDDYSIFFWIVLLKSKYEVSQ 584
Query: 525 AFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQHNGVAER 584
K + ++ + + K +R+DNG E+ F GI ++ TPQ NG ER
Sbjct: 585 HVKNFINLIHTQYHITPKVVRSDNGPEF---LLNSFYASKGIVHHKSCVETPQQNGRVER 641
Query: 585 MNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSH 644
++ + R+L QS LP +W+ A+ A ++INR S L +K P ++ G +
Sbjct: 642 KHQHILNVGRALLFQSKLPSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQT 701
Query: 645 LRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIRSRDVVFNER 704
+VFG + Y R KL +++K +F+GY GY L D +++ SR V F+E
Sbjct: 702 FKVFGSLCYSTTLQSHRTKLSARARKTVFLGYAVGYKGYVLLDIHTREIHISRHVQFHEH 761
Query: 705 IM-YKNRHDTV-------ASDSEQSG---PVFVEVDDIPKSLPNELVEDPQSEESTDTPQ 753
I+ Y T+ +SDS + P + I ++ P + + +P
Sbjct: 762 ILPYPTNPSTITTTWDYFSSDSCSASNPLPKSSTISPIIPPPFIDVDTPPSDDNHSVSPI 821
Query: 754 TSPPKVLRSER---PPKPNRKYM---------------NYLLLTDGGEPEC--------F 787
PP + +S R PP + Y+ +YL + C
Sbjct: 822 PQPPVIRKSSRITQPPTHLQDYVCSVSDDTSFVQYPISHYLSYNNLSSSHCAFALSLDSH 881
Query: 788 EEACQTADASK---WELAMKDEIKSLISNQTWELAELPVGKKALHNKWVYRVKEEHDGS- 843
E A+ASK W+ AM+ E+ +L + TW+L +LP K + +W+Y++K DGS
Sbjct: 882 TEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHADGSI 941
Query: 844 ------------KQKEGVDYTEIFAPVVKLNTIRSVLSIVASEGLYLEQLDVKTAFLHGD 891
Q EG+DY + ++PV KL T+R+++++ ++ QLDV AFLHGD
Sbjct: 942 ERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGD 1001
Query: 892 LDKEIYMYQPEGFSEKGKENMVCKLKKSLYGLKQAPRQWYRKFDGFMHREGFQRCNADHC 951
L +++YM P+G + K N VCKL KSLYGLKQA R+WY K + + + +DH
Sbjct: 1002 LQEDVYMIVPQGITP-SKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSDHS 1060
Query: 952 CYFKRFKTSYIILLLYVDDMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITRD 1011
+ K+ TS+ LL+YVDD+++ G ++E +++K L ++KDLG K LG+++
Sbjct: 1061 LFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVAHS 1120
Query: 1012 KQKQVLQLSQAEYINRVLQRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIP-Y 1070
Q + L Q +Y +L AKP STP +L D P + IP Y
Sbjct: 1121 SQG--ISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGP-------PFSDIPSY 1171
Query: 1071 ASAIGSLMYAMVCTRPDIGHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKCLYFGK- 1129
IG L+Y + TRP I A +S++++ P + H+ A ILRYL+ + + L+F +
Sbjct: 1172 RRLIGRLIY-LTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRD 1230
Query: 1130 GELKVQGYVDADYGGDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTXA 1189
L + GY DAD+ G +D RRS + F +G + + W ++ Q V+ S++EAEY A+ A
Sbjct: 1231 SSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAA 1290
Query: 1190 SKEMIWLQGLLTELGFMRKK-NILYSDSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLEN 1248
+ E+ WL LL +L K ++LY D+QSA+H+A N FH RTKH+ + H +R L+
Sbjct: 1291 TCELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQA 1350
Query: 1249 DVLKLEKIQGNKNPADMLTKAVTIDKLKLCSTSVGLL 1285
++KL + AD TK + +G+L
Sbjct: 1351 CIMKLLPVTSADQLADFFTKPLLPQPFHTLLFKLGML 1387
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 327/1088 (30%), Positives = 502/1088 (46%), Gaps = 155/1088 (14%)
Query: 285 SLESKQESWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIKLNGS 344
S +K W++DSGA+ H + V L N + G V S
Sbjct: 379 SSTNKPPFWLIDSGANEHICCDITFFSSFYRIKPVNVSLPNGTIVLVHYAGTVSF---NS 435
Query: 345 TWELKDVRHIPDLRKNLISVGQLASDGYTTTFHGDNWKIT----KDAMMVARGSKSGTLY 400
+ L V + P+ NLISV +L + T FH K + M+ + LY
Sbjct: 436 KFYLNHVLYSPNFLLNLISVAKLC-ESLTCFFHFSLDKCLIQDQQSLKMIGLAKQMDGLY 494
Query: 401 STGGAS-------------YFIAVAANS--------ETPNIWHQRLGHMSMKGMKILHSQ 439
+S Y V +S + +WH RLGH+S + ++ L
Sbjct: 495 KFYPSSSSCNLELFSSPTKYCNVVLPSSCNKIPTFVPSDTLWHFRLGHLSKQRLQTLSLL 554
Query: 440 GKLPGLQSIEID---MCEDCIFGKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGG 496
SI+ID +C+ C F K K + F +N
Sbjct: 555 -----YPSIKIDNKAICDLCHFAKHKHLPFTSN--------------------------- 582
Query: 497 KHYFVTFIDNHSRKVWVYFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTR 556
+HSR +W+ LK K+EV K + M++N K +RTDNG E+ +
Sbjct: 583 ---------DHSRFLWIILLKTKAEVSTHVKNFITMIKNHFHTTPKFIRTDNGPEFMLST 633
Query: 557 FKKFCYEHGIKMERTVPGTPQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAY 616
HGI +++ TPQ NG ER ++ + R+L QS LP +W A+ A +
Sbjct: 634 LYS---SHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPAYWCYAIQHAVF 690
Query: 617 LINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGY 676
LINR P+ L ++ P V K S +VFGC+ Y KL +++K IFIGY
Sbjct: 691 LINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTLQSHTTKLKHRARKSIFIGY 750
Query: 677 GGDEFGYRLWDEENKKVIRSRDVVFNERIM---------------YKNRHDTVASDSEQS 721
G+ L+D ++++ SR V F+E + + H T + + S
Sbjct: 751 QSGYKGFTLYDLHSREIFISRHVTFHENFLPYPHTSSSTSPDWQYFSYFHPTPVAPNLPS 810
Query: 722 GPVFVEVDDIPKS--------------LPNELVEDPQSEESTDTPQ-------------T 754
P+ +DDI LP + S + P T
Sbjct: 811 PPI---IDDIIAPDHPSPDPTPPTSPILP---IVPRHSTRNVTAPSYLQDYICNNIHAFT 864
Query: 755 SPPKVLRSERPPKPNRKYMNYLLLTDGGEPECFEEACQTADASKWELAMKDEIKSLISNQ 814
P S +R + L T EP+ + EA + W+ AM+ E+++L
Sbjct: 865 YPITHSLSHHHLSNSRSFFVMSLHTQP-EPKSYAEA---SKLDCWKHAMQVELQALEKTG 920
Query: 815 TWELAELPVGKKALHNKWVYRVKEEHDGS-------------KQKEGVDYTEIFAPVVKL 861
TW+L +LP K + +W+Y+VK DG+ Q EG+DY + ++PV KL
Sbjct: 921 TWKLVDLPPNVKPIGCRWIYKVKFHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKL 980
Query: 862 NTIRSVLSIVASEGLYLEQLDVKTAFLHGDLDKEIYMYQPEGFSEKGKENMVCKLKKSLY 921
T+R V+++ + +L QLDV AFLHGDL +++YM P G + K N VCKL KSLY
Sbjct: 981 TTVRLVIALSSINNWHLHQLDVNNAFLHGDLQEDVYMMVPPGI-KSSKLNQVCKLTKSLY 1039
Query: 922 GLKQAPRQWYRKFDGFMHREGFQRCNADHCCYFKRFKTSYIILLLYVDDMLVAGPDINEI 981
GLKQA R+WY K + + + + +D+ + K+ TS+ +LL+YVDD+++AG I+E
Sbjct: 1040 GLKQASRKWYEKLTSVLFDQHYTQATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEF 1099
Query: 982 KNLKKQLSKEFDMKDLGLAKKILGMQITRDKQKQVLQLSQAEYINRVLQRFNMNEAKPVS 1041
++K L F +KDLG K LG+++ K + L Q +Y +L +KP+S
Sbjct: 1100 SHIKSILDSLFKIKDLGQLKYFLGIEVAHSKLG--ISLCQRKYCLDLLADIGSLGSKPIS 1157
Query: 1042 TPLASHFRLSKDQSPQTEEERKDMAKIPYA-SAIGSLMYAMVCTRPDIGHAVGVVSRYMS 1100
TP S +L D S E+ +P +G L+Y + TRPDI +S+++S
Sbjct: 1158 TPSDSSIKLHLDSSSPFED-------VPACRRLVGRLLY-LNNTRPDITFITQQLSQFLS 1209
Query: 1101 KPGKTHWEAVKWILRYLRGTTEKCLYFGK-GELKVQGYVDADYGGDIDHRRSTTCYIFTV 1159
+P + H A +L+YL+ K L+F + L +QG+ DAD+ G ID RRS + F +
Sbjct: 1210 QPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFFL 1269
Query: 1160 GTTAVCWMSQVQKIVALSTTEAEYVAVTXASKEMIWLQGLLTELGFMRKK-NILYSDSQS 1218
G + + W ++ Q V+ S++EAEY A+ A+ E+ W+ LL +L K +LY D+QS
Sbjct: 1270 GNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILYLLKDLHTTCPKLPVLYCDNQS 1329
Query: 1219 AIHLAKNSTFHSRTKHIGLRYHFIRSLLENDVLKLEKIQGNKNPADMLTKAVTIDKLKLC 1278
AIH+A N FH RTKH+ + H IR L++ VLKL + AD TKA+ +
Sbjct: 1330 AIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVSSQDQVADFFTKALLPKPFNIL 1389
Query: 1279 STSVGLLE 1286
+ +GL+
Sbjct: 1390 LSKLGLIN 1397
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 274/805 (34%), Positives = 405/805 (50%), Gaps = 80/805 (9%)
Query: 542 KKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQHNGVAERMNRTLTERARSLRVQSG 601
K +R DNG E+ K F HGI ++ TPQ NG ER ++ + R+L QS
Sbjct: 459 KTIRIDNGPEF---MLKDFYASHGIIHHKSCVETPQQNGRVERKHQHILNVVRALLFQSK 515
Query: 602 LPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDHGR 661
LP FW+ AV A +LINR + L ++ P V K L +VFGC+ Y + R
Sbjct: 516 LPPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCLCYASTLQNHR 575
Query: 662 NKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIRSRDVVFNERIM--YKNRHDTVA---- 715
KL +++K IF+GY GY L+D ++++ SR V F+E I+ +KN T A
Sbjct: 576 TKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHETILPYHKNPSSTTADWNY 635
Query: 716 -----SDSEQSGP-------VFVEVDDIPKSLPNELVEDPQSEESTDTPQTSPPKVLRSE 763
S S P + +DDI LP+ V P + SP + R
Sbjct: 636 YPSSQSYSHDQSPNVNHQVHIPAVIDDI---LPSTHVLPPSPPYDSPPIHVSPRRSNRVR 692
Query: 764 RPP---------------KPNRKYMNY-----------LLLTDGGEPECFEEACQTADAS 797
P P Y+NY L EP + EA +
Sbjct: 693 TAPLHLQDYVCNSVHSTTYPLSHYINYNNISTNHASFISSLQTTPEPTTYVEA---SKHD 749
Query: 798 KWELAMKDEIKSLISNQTWELAELPVGKKALHNKWVYRVKEEHDGS-------------K 844
W AM+ E+ +L TW++ +LP K + +W+Y+VK DGS
Sbjct: 750 CWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIERYKARLVAKGYT 809
Query: 845 QKEGVDYTEIFAPVVKLNTIRSVLSIVASEGLYLEQLDVKTAFLHGDLDKEIYMYQPEGF 904
Q EG+DY E ++PV KL T+R V+++ + +L QLDV AFLHG+L +++YM P G
Sbjct: 810 QIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGELQEDVYMILPPGI 869
Query: 905 SEKGKENMVCKLKKSLYGLKQAPRQWYRKFDGFMHREGFQRCNADHCCYFKRFKTSYIIL 964
+ K + VCKLKKSLYGLKQA RQWY K + ++ + + ++DH + K+ S+ IL
Sbjct: 870 N-IAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTIL 928
Query: 965 LLYVDDMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITRDKQKQVLQLSQAEY 1024
L+YVDD+++AG + E +N+K L F +KDLG K LG+++ K + L Q +Y
Sbjct: 929 LVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAHSKLG--ISLYQRKY 986
Query: 1025 INRVLQRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIP-YASAIGSLMYAMVC 1083
+L +KP+STP +L D S ++ IP Y +G L+Y +
Sbjct: 987 CLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDD-------IPAYRRLVGRLLY-LNN 1038
Query: 1084 TRPDIGHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKCLYFGK-GELKVQGYVDADY 1142
TRPDI +S+++S P H A LRYL+ K L+F + L +QG+ DAD+
Sbjct: 1039 TRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDADW 1098
Query: 1143 GGDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTXASKEMIWLQGLLTE 1202
G +D R+S T F +G + + W ++ Q V+ S++EAEY A+ A+ E+ WL LL +
Sbjct: 1099 AGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLYLLND 1158
Query: 1203 LGFM-RKKNILYSDSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLENDVLKLEKIQGNKN 1261
L K +LY D+QSA+H+A N FH RTKH+ + H +R L+ VLKL +
Sbjct: 1159 LHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVSSQDQ 1218
Query: 1262 PADMLTKAVTIDKLKLCSTSVGLLE 1286
AD TKA+ L + +GL++
Sbjct: 1219 IADFFTKALLPKTFSLLLSKLGLID 1243
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 338 bits (868), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 227/740 (30%), Positives = 340/740 (45%), Gaps = 151/740 (20%)
Query: 459 GKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVWVYFLKY 518
+Q R+ F T EL+H D+WGP ++ YF+T +D+ S+ W L
Sbjct: 2 ARQSRLPFPPKTHT-TTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSC 60
Query: 519 KSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQH 578
KS F K + MVEN+ +K +R+DNG E+ F GI +++ P TPQ
Sbjct: 61 KSNAFHVLKAFILMVENQFSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTPQQ 120
Query: 579 NGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGK 638
NGV ER ++ + E AR+L QS LP +W+E
Sbjct: 121 NGVVERKHKFILETARALLFQSKLPVKYWSEF---------------------------- 152
Query: 639 EVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIRSRD 698
R K DPK+ +F+GY GY++ + +K+ SRD
Sbjct: 153 ---------------------HRTKFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRD 191
Query: 699 VVFNERIMYKNRHDTVASDSEQSGPVF----VEVDDIPKSLPNELVEDPQSEESTDTP-- 752
V+F+E I S P F V + D P S + +D S+E+T +P
Sbjct: 192 VIFHETIF-----PFAMSKDPTHFPKFPFHCVSLHDYPTSYDD---QDYSSKETTTSPTH 243
Query: 753 -----QTSP-----------PKVLRSER------------------------PPKPNRKY 772
TSP P++ RS+R PP+P+
Sbjct: 244 ITPENSTSPTHITPENSTSIPQLRRSQRLHKTPTYLTDYVHNVPSSTVSNSQPPQPHSLP 303
Query: 773 MNYLL---------------------LTDGGEPECFEEACQTADASKWELAMKDEIKSLI 811
+N L ++ EP +EEA W+ AM E +L
Sbjct: 304 LNALFTLKHYVSPDVFSFDSQSFIMNISHDCEPNSYEEASMDP---AWQKAMTQEFLALH 360
Query: 812 SNQTWELAELPVGKKALHNKWVYRVKEEHDGS-------------KQKEGVDYTEIFAPV 858
N TW L LP KK++ +WVY+VK + DGS Q G+DYTE F+PV
Sbjct: 361 DNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPV 420
Query: 859 VKLNTIRSVLSIVASEGLYLEQLDVKTAFLHGDLDKEIYMYQPEGFSEKGKENMVCKLKK 918
VK+ T+R+++ A + + QLDV AFLHGDL +E+YM P G + K+ +VCKL K
Sbjct: 421 VKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPGLATPHKD-LVCKLNK 479
Query: 919 SLYGLKQAPRQWYRKFDGFMHREGFQRCNADHCCYFKRFKTSYIILLLYVDDMLVAGPDI 978
SLYGLKQA RQWY K +H G++ D+ ++K+ S + L +YVDD+L+ G D
Sbjct: 480 SLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVFLGVYVDDILLTGTDT 539
Query: 979 NEIKNLKKQLSKEFDMKDLGLAKKILGMQITRDKQKQVLQLSQAEYINRVLQRFNMNEAK 1038
NEI LK+ L +F +KDLG LG+++ K +L +SQ +++ +L+ FN +
Sbjct: 540 NEIDELKRFLDNQFKIKDLGRLHYFLGLEVLY-KDDGIL-VSQRKFVLDLLKEFNCDHMA 597
Query: 1039 PVSTPLASHFRLSKDQSPQTEEERKDMAKIPYASAIGSLMYAMVCTRPDIGHAVGVVSRY 1098
P+S+PL + +L + ++ Y IG L + + TR D+ + V ++S+Y
Sbjct: 598 PLSSPLDPNIKLRSHEGKVLDDPTY------YRKLIGKLNF-LTHTRLDLAYGVQLLSQY 650
Query: 1099 MSKPGKTHWEAVKWILRYLR 1118
M P + H A +LRYL+
Sbjct: 651 MQDPREPHLHAAFHMLRYLK 670
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 269 bits (688), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 216/799 (27%), Positives = 347/799 (43%), Gaps = 139/799 (17%)
Query: 532 MVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQHNGVAERMNRTLTE 591
M+EN+ + K +RTDNG E+ +F GI +R+ TPQ NG ER ++ +
Sbjct: 1 MIENQFHVTPKIIRTDNGSEF---LLHEFYASKGILHQRSCVETPQQNGRVERKHQHILN 57
Query: 592 RARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCV 651
R+L QS LP FW+ A A +LINR P+ L + P + ++ +VFGC+
Sbjct: 58 IGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDITTFKVFGCL 117
Query: 652 AYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIRSRDVVFNERIM-YKNR 710
Y R KL+ +++K +F+GY GY L+D +++ SR VVF+E ++ YK+
Sbjct: 118 CYASSLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPYKSI 177
Query: 711 HDTVASDSE-----QSGPVFVEVDDIPKSLPNE----LVEDPQSEESTDTPQTSPPKVLR 761
+ + D E S + V DI S + + T+ P PP
Sbjct: 178 SSSQSLDWEYFTSISSLLIIPSVSDISHSPSTTKYVPHTQPTTTTTPTNDPSRPPPIRCS 237
Query: 762 SERPPKPN---------------------RKYMNY-----------LLLTDGGEPECFEE 789
S P+ Y++Y L L EP+ + E
Sbjct: 238 SRNKISPSYLKDYICPHKSSTSVNNLYSISNYVSYHNISNPHSHFILSLHAHNEPKTYTE 297
Query: 790 ACQTADASKWELAMKDEIKSLISNQTWELAELPVGKKALHNKWVYRVKEEHDGSKQKEGV 849
A + W AM+ E+ +L + TW++ + P K + +W+Y++K D + +
Sbjct: 298 ANK---FECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIE---- 350
Query: 850 DYTEIFAPVVKLNTIRSVLSIVASEGLYLEQLDVKTAFLHGDLDKEIYMYQPEGFSEKGK 909
R +VA +E LD + +S K
Sbjct: 351 ---------------RYKARLVAKGYNQVEGLDYF-----------------DTYSPVAK 378
Query: 910 ENMVCKLKKSLYGLKQAPRQWYRKFDGFMHREGFQRCNADHCCYFKRFKTSYIILLLYVD 969
+ + A R+WY K + G+++ +ADH + K T + LL+YVD
Sbjct: 379 HTTI----------RLASRKWYEKLASLLVNHGYKQASADHSLFIKHSTTQFTALLVYVD 428
Query: 970 DMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITRDKQKQVLQLSQAEYINRVL 1029
D+++AG ++E +K L F +KDLG K LG+++ K + L Q +Y +L
Sbjct: 429 DIILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLGLEVAHSKLG--ISLCQRKYGLDLL 486
Query: 1030 QRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIP-YASAIGSLMYAMVCTRPDI 1088
+ ++KPV+TP +L D SP + IP Y +G L+Y + TRPDI
Sbjct: 487 SDTGLLDSKPVATPSDPSIKLYHDDSPLYTD-------IPAYRRLVGRLLY-LNATRPDI 538
Query: 1089 GHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKCLYFGKGELK-VQGYVDADYGGDID 1147
+S+++SKP +TH+ A +LRYL+ K L+F + L +QGY DAD+ G D
Sbjct: 539 TFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRD 598
Query: 1148 HRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTXASKEMIWLQGLLTELGFMR 1207
RRS + F +G + + W ++ Q V+ S++EAEY A+ A+
Sbjct: 599 TRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRALGAAT----------------- 641
Query: 1208 KKNILYSDSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLENDVLKLEKIQGNKNPADMLT 1267
N FH RTKH+ + H +R L ++KL I AD T
Sbjct: 642 ----------------SNPVFHERTKHLEIDCHIVREKLAAGIMKLLPISSKNQLADCFT 685
Query: 1268 KAVTIDKLKLCSTSVGLLE 1286
K++ +GL++
Sbjct: 686 KSILPQPFNSLLFKLGLVD 704
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 203/732 (27%), Positives = 324/732 (44%), Gaps = 125/732 (17%)
Query: 277 GEDDALICSLESKQ-ESWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKG 335
G A CS SW++DSGA+ H K + V L N + G
Sbjct: 334 GIHSAFSCSFHVNSIPSWIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTSIYVHYAG 393
Query: 336 VVKIKLNGSTWELKDVRHIPDLRKNLISVGQLASDGYTTTFHGDNWKITKDAM---MVAR 392
V L V + P+ + NLISV ++ + N + +D M+
Sbjct: 394 NVHFT---PYLHLTHVLYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGL 450
Query: 393 GSKSGTLYSTGGASYFI---------------------------------AVAANSETPN 419
G KS LY + +F+ V +S P
Sbjct: 451 GDKSDGLYKL--SMHFVNQQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPE 508
Query: 420 --IWHQRLGHMSMKGMKILHSQGKLPGLQSIEID---MCEDCIFGKQKRVSFQTNRRTPK 474
+WH RLGH+S + + + +L SI +D C+ C F + K++ F + +
Sbjct: 509 SALWHFRLGHLSNQRLSTM---SRL--YPSIIVDNKAACDICHFARHKKLPF-PHSSSHA 562
Query: 475 KEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVWVYFLKYKSEVFDAFKIWKAMVE 534
K +L+H D+WGP ++ + G YF+T +D+H+R +W+ LK K+EV K + A++E
Sbjct: 563 NSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIE 622
Query: 535 NETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQHNGVAERMNRTLTERAR 594
N+ + K +RTDNG E+ F GI +R+ TPQ NG ER ++ + R
Sbjct: 623 NQFHITPKIIRTDNGSEF---LLHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGR 679
Query: 595 SLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYV 654
+L QS LP FW+ A A +LINR P++ L+++ P ++ ++ +VFGC+ Y
Sbjct: 680 ALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYA 739
Query: 655 HISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIRSRDVVFNERIM-YKNRHDT 713
R KL+ +++K +F+GY G L+D +++ SR VVF+E ++ YK+
Sbjct: 740 SSLQSHRTKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISRHVVFHECVLPYKSNSSP 799
Query: 714 VASDSEQSGPVFVEVDDIPKSLPNELVEDPQSEESTDTPQTS------------PPKV-- 759
+ D E + P LP+ P S + P TS PP +
Sbjct: 800 QSHDWE-----YFTSFSTPLDLPSGTDTSPHSAITDIVPYTSPTPTSTSSIIDIPPPLPT 854
Query: 760 ---LRSERPPKPNRKYM----------------NY--------------LLLTDGGEPEC 786
R++ PP + ++ N+ L L EP+
Sbjct: 855 RHSSRNKTPPSYLKDFICANKSSASVNSLHSISNFVSYHNISNSHSHFILSLHAHTEPKS 914
Query: 787 FEEACQTADASKWELAMKDEIKSLISNQTWELAELPVGKKALHNKWVYRVKEEHDGS--- 843
+ EA + W AM+ E+ +L + TW++ +LP K + +W+Y+VK DG+
Sbjct: 915 YTEANK---FECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIER 971
Query: 844 ----------KQKEGVDYTEIFAPVVKLNTIRSVLSIVASEGLYLEQLDVKTAFLHGDLD 893
Q EG+DY + ++PV K TIR VL++ + +L QLDV AFLHGDL
Sbjct: 972 YKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDLQ 1031
Query: 894 KEIYMYQPEGFS 905
+++YM P G S
Sbjct: 1032 EDVYMDIPPGVS 1043
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 223 bits (569), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 201/675 (29%), Positives = 314/675 (46%), Gaps = 148/675 (21%)
Query: 593 ARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVA 652
RS+ + +P FW AVNTA Y++NR P+ ++ K+PEE+WS ++ +S+L+VFG +
Sbjct: 2 VRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSIF 61
Query: 653 YVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIRSRDV-VFNERIMYKNRH 711
Y H+ D R KL+ K++ I +GY + YRL D +KK+ +RDV V E Y + +
Sbjct: 62 YKHVPDSRRKKLEDKTEAMILVGY-HNTGAYRLLDLHSKKISITRDVKVLEEE--YWDWN 118
Query: 712 DTVASDSEQSGPVFVEVDDIPKSLPNELV--EDPQSEESTDTPQTSPPKVLRSERPPKPN 769
S E++ V +E K +EL+ E+ SEE + P + R +R +
Sbjct: 119 SNECSVYEKN--VIIE----NKKESDELLTNEEVISEEVS---YEEPTTIARPQRNKQML 169
Query: 770 RKYMNYLLLTD---GGEPECFEEACQTADASKWELAMKDEIKSLISNQTWELAELPVGKK 826
R+ + + D G + E A ++L KS NQTWEL +L GKK
Sbjct: 170 RRLQDCQVTGDDEIGSDGELVHFAMLVDTKPLYKL------KSSGKNQTWELIKLTDGKK 223
Query: 827 ALHNKWVYRVKEEHDGS-------------KQKEGVDYTEIFAPVVKLNTIRSVLSIVAS 873
A+ KWV+++K +G +KEG DYTE+ V KLN
Sbjct: 224 AIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGFDYTEV---VFKLN----------- 269
Query: 874 EGLYLEQLDVKTAFLHGDLDKEIYMYQPEGFSEKGKENMVCKLKKSLYGLKQAPRQWYRK 933
+ LY GLKQAPR W ++
Sbjct: 270 KALY--------------------------------------------GLKQAPRAWNKR 285
Query: 934 FDGFMHREGFQRCNADHCCYFKRFKTSYIILLLYVDDMLVAGPDINEIKNLKKQLSKEFD 993
+ F +GF++C A+H Y K G +
Sbjct: 286 IEKFFVEQGFKKCLAEHGVYVK-------------------GSE---------------- 310
Query: 994 MKDLGLAKKILGMQITRDKQKQVLQLSQAEYINRVLQRFNMNEAKPVSTPLASHFRLSKD 1053
G + I+ ++I R + L L+Q +Y + ++FNM + S LA ++
Sbjct: 311 ----GTSLLIICLEILRTTKG--LILNQTKYDTEIQKKFNMLDFNS-SITLAYANNIN-- 361
Query: 1054 QSPQTEEERKDMAKIPYASAIGSLMYAMVCTRPDIGHAVGVVSRYMSKPGKTHWEAVKWI 1113
+ +EE K + IG L Y + +R DI ++VG+VS++MS P KTH+ A K I
Sbjct: 362 ---EVKEEDKGVDPTILRRLIGLLRY-LCQSRLDISYSVGIVSKFMSNPLKTHFLAAKKI 417
Query: 1114 LRYLRGTTEKCLYFGKG----ELKVQGYVDADYGGDIDHRRSTTCYIFTVGTTAVCWMSQ 1169
+RY+ GT + + F + +L + Y DAD+ D RR TT ++F + + W S+
Sbjct: 418 IRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSK 477
Query: 1170 VQKIVALSTTEAEYVAVTXASKEMIWLQGLLTELGFMRKKNI-LYSDSQSAIHLAKNSTF 1228
Q IVALS+ E EYV + A+ + WLQ +L + K+ I L D++ AI+LAKN
Sbjct: 478 KQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQPIKLLIDNKYAINLAKNHIS 537
Query: 1229 HSRTKHIGLRYHFIR 1243
H ++KHI ++H++R
Sbjct: 538 HGKSKHIETKFHYLR 552
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 210 bits (534), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 220/437 (50%), Gaps = 28/437 (6%)
Query: 292 SWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIKLNGSTWELKDV 351
+W++DSGAS H S + + YAP + L N G V ++V
Sbjct: 391 TWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNF---SPGLIARNV 447
Query: 352 RHIPDLRKNLISVGQLASDGYT-TTFHGDNWKITKDAMMVARGSKS---GTLYSTGGASY 407
++ + + NL+SV +L D TF D I + + G G + G+
Sbjct: 448 LYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQV 507
Query: 408 F--------IAVAANSETPN------IWHQRLGHMSMKGMKILHSQGKLPGLQSIEIDMC 453
F IA++ +S + +WH RLGH+S ++L Q P ++ +C
Sbjct: 508 FSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSND--RLLRMQQHFPCIKVDSNSVC 565
Query: 454 EDCIFGKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVWV 513
+ C + + K++ F+ + EL+H D+WGP + SI G YF+T +D++SR W+
Sbjct: 566 DICHYSRHKKLPFKLSMNK-ASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWI 624
Query: 514 YFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVP 573
K KSEV + + + +EN+ K+K +RTDNG E+ F GI+ + +
Sbjct: 625 MLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQTSCV 681
Query: 574 GTPQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEE 633
TPQ NG ER ++ + AR+L QS LPK FW+ +V A Y+INR P+ L++K P
Sbjct: 682 ETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSVLHAIYIINRIPTPLLQNKSPYF 741
Query: 634 VWSGKEVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKV 693
+ G + L++ +VFGC++Y + R K D +++KC+F+GY G L+D +K +
Sbjct: 742 LRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTI 801
Query: 694 IRSRDVVFNERIM-YKN 709
SR+V ++E I+ Y N
Sbjct: 802 FASRNVTYHEHILPYSN 818
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 202 bits (514), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 216/440 (49%), Gaps = 34/440 (7%)
Query: 292 SWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIKLNGSTWELKDV 351
+W++DSGAS H S + + YAP + L N G V ++V
Sbjct: 321 TWIVDSGASDHICSSIKNFDSYAPIIPVHIKLPNGNMAIAKFSGTVTF---SPGLIARNV 377
Query: 352 RHIPDLRKNLISVGQLASDGYT-TTFHGDNWKITKDAMMVARGSKS---GTLYSTGGASY 407
++ + + NL+SV +L D TF D I + + G G + G+
Sbjct: 378 LYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQV 437
Query: 408 FIAVAANSETPNI-----------------WHQRLGHMSMKGMKILHSQGKLPGLQSIEI 450
F + + P I WH RLGH+S ++L Q P ++
Sbjct: 438 F---SQFNHQPVIASSQASSSTTFLPQEALWHFRLGHLSND--RLLRMQQHFPCIKVDSN 492
Query: 451 DMCEDCIFGKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRK 510
+C+ C + + K++ F+ + EL+H D+WGP + SI G YF+T +D++SR
Sbjct: 493 SVCDICHYSRHKKLPFKLSMNK-ASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRF 551
Query: 511 VWVYFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMER 570
W+ K KSEV + + + +EN+ K+K +RTDNG E+ F GI+ +
Sbjct: 552 TWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQT 608
Query: 571 TVPGTPQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKI 630
+ TPQ NG ER ++ + AR+L QS LPK FW+ +V A Y+INR P+ L++K
Sbjct: 609 SCVETPQQNGRVERKHQHILNVARALLFQSKLPKVFWSYSVLHAIYIINRIPTPLLQNKS 668
Query: 631 PEEVWSGKEVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEEN 690
P + G + L++ +VFGC++Y + R K D +++KC+F+GY G L+D +
Sbjct: 669 PYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNH 728
Query: 691 KKVIRSRDVVFNERIM-YKN 709
K + SR+V ++E I+ Y N
Sbjct: 729 KTIFASRNVTYHEHILPYSN 748
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 167/612 (27%), Positives = 257/612 (41%), Gaps = 94/612 (15%)
Query: 277 GEDDALICSLESKQESWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGV 336
G CS+ SK + W LDSGA+ H + +F K+ N +P N+
Sbjct: 363 GISSIFSCSINSKSDVWFLDSGANEHIVNNTHWFT-----SFHKI---NPRPVNLPNGSS 414
Query: 337 VKIKLNGST-----WELKDVRHIPDLRKNLISVGQLASD-GYTTTFHGDNWKIT--KDAM 388
V ++ G+ + L++V + P NLIS+ ++ S FH +
Sbjct: 415 VLVEYAGTIRFTPQFYLENVLYSPSFTLNLISIFKVCSSLNCYAIFHNKQCLLQDLHSQK 474
Query: 389 MVARGSKSGTLYSTGGASYFIAVAANSETPNIWHQRLGHMSMKGMKILHSQGKLPGLQSI 448
M+ G + G YS +WH RLGH+S K +++H P L
Sbjct: 475 MIGLGEQFGVYYSYSA---------------LWHFRLGHVSPK--RLIHMSQLYPTLTVD 517
Query: 449 EIDMCEDCIFGKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHS 508
C+ C F KQK++ F +N + K EL+H D+WGP +++SI YF+T +D++S
Sbjct: 518 VHATCDICHFAKQKKLPF-SNSISVASIKFELLHFDIWGPLSITSIHNHRYFLTILDDYS 576
Query: 509 RKVWVYFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKM 568
R VW+ LK KSEV K + +++ + + K +R+DNG E+ F GI
Sbjct: 577 RYVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEF---LLHSFYASKGIVH 633
Query: 569 ERTVPGTPQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEH 628
R+ TPQ NG ER ++ + R+L QS LP +W+ A+ A ++INR S L +
Sbjct: 634 HRSCVETPQQNGRVERKHQHILNVGRALLYQSKLPVSYWSYALLHATFIINRVTSPTLHN 693
Query: 629 KIPEEVWSGKEVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDE 688
K P ++ +VFG + Y R KL +++K +F+GY GY L D
Sbjct: 694 KSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSHRTKLSARARKSVFLGYTVGFKGYVLLDI 753
Query: 689 ENKKVIRSRDVVFNERIM-YKNRHDTVASDSEQSGPVFVEVDDIPKSLPNE-----LVED 742
+++ SR V F E I+ Y ++ + E + D S PN L
Sbjct: 754 HTREIHISRHVQFYEHILPYPATSSSITTAWE-----YFSSDTCSSSNPNSDTPITLPSS 808
Query: 743 PQSEESTDTPQTSPP---------------KVLRSERPPKPNRKYM-------------- 773
P D P T K +R+ PP + Y+
Sbjct: 809 PPPFIDVDIPPTDHEHPISSIPSPSPPIIRKSIRNTHPPTHLQDYVCNTSTASVLSDNSF 868
Query: 774 ------NYLLLTDGGEPEC--------FEEACQTADASK---WELAMKDEIKSLISNQTW 816
+Y + C E A+ASK W AMK E+ +L + TW
Sbjct: 869 VHHPISHYYSYNNLSSSHCAFAMSLDSHTEPTTYAEASKFDCWNQAMKVELSALENTGTW 928
Query: 817 ELAELPVGKKAL 828
L +LP K +
Sbjct: 929 RLVDLPPNVKPI 940
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 143/434 (32%), Positives = 213/434 (49%), Gaps = 32/434 (7%)
Query: 265 EGKLEANVAS-----TLGEDDALICSLESKQES--WVLDSGASFHATSQKELLERYAPGN 317
E K ANV +L E +L+ S +SKQ W++D+GA+ H Y+
Sbjct: 363 ETKCSANVVKGSNSISLFESKSLLASFDSKQNDPGWIVDTGATHHTCYDLNWFTSYSKIE 422
Query: 318 FGKVYLGNDQPCNIVGKGVVKIKLNGSTWELKDVRHIPDLRKNLISVGQLASD-GYTTTF 376
V L N G VK+ + S + +V ++P NLISV +L + F
Sbjct: 423 TINVNLPNGSVIEACYIGQVKLSKDLS---IDNVLYLPKFAVNLISVSKLCREQNCKLEF 479
Query: 377 HGDNWKITKDAMMVARG---SKSGTLYSTGGASYFIAVAANS--------ETPN--IWHQ 423
D I + + G K G Y ++V+ S P+ +WH
Sbjct: 480 EADICIIQEKNTLRKIGLAKEKHGLYYLETDERNKVSVSNISAQVELHQKHVPDGVLWHL 539
Query: 424 RLGHMSMKGMKILHSQ-GKLPGLQSIEIDMCEDCIFGKQKRVSFQTNRRTPKKEKLELVH 482
RLGH+S M ++ +P D+C+ C +QK + F + R K +LVH
Sbjct: 540 RLGHLSHDRMICMNKMYSYVPVSPHTACDVCQMC---RQKILPFPISSRN-AKTAFDLVH 595
Query: 483 SDVWGPTTVSSIGGKHYFVTFIDNHSRKVWVYFLKYKSEVFDAFKIWKAMVENETGLKIK 542
D+WGP + +S+ G YF+T +D+ +R VW+ LK KSE K + +MVE + KIK
Sbjct: 596 FDIWGPFSTTSVHGHKYFLTILDDCTRHVWIVMLKNKSEASYQVKNFVSMVERQFERKIK 655
Query: 543 KLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQHNGVAERMNRTLTERARSLRVQSGL 602
+R+DNG E+ ++F + GI +R+ TPQ NG ER ++ + +R+L QS L
Sbjct: 656 MIRSDNGPEF---MLREFYDKKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQSKL 712
Query: 603 PKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDHGRN 662
PK FW+ AV A YLINR P+ L +K EV + LS L+VFGC++Y R
Sbjct: 713 PKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVNRY 772
Query: 663 KLDPKSKKCIFIGY 676
K DPK++KC F+G+
Sbjct: 773 KFDPKARKCAFLGF 786
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 165/302 (54%), Gaps = 25/302 (8%)
Query: 803 MKDEIKSLISNQTWELAELPVGKKALHNKWVYRVKEEHDGS-------------KQKEGV 849
M+ EI +L TW++ +LP K + +W++++K DGS Q EG+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 850 DYTEIFAPVVKLNTIRSVLSIVASEGLYLEQLDVKTAFLHGDLDKEIYMYQPEGFSEKGK 909
DY + ++PV KL T+R ++++ + +L Q DV AFLHG+L +++YM P G +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHSHQ 120
Query: 910 ENMVCKLKKSLYGLKQAPRQWYRKFDGFMHREGFQRCNADHCCYFKRFKTSYIILLLYVD 969
+ VCKL KSLYGL+QA +WY K + G+++ +D + K +S+ ILL+YVD
Sbjct: 121 DE-VCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 970 DMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITRDKQKQVLQLSQAEYINRVL 1029
D+++AG ++E +K L F +KD+G K LG+++ K + L Q +Y +L
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSG--ISLCQRKYCLDLL 237
Query: 1030 QRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIP-YASAIGSLMYAMVCTRPDI 1088
+ + +KP++TP +L D +P + IP Y IG L+Y + TRPDI
Sbjct: 238 EDSGLTGSKPMNTPSDPSIKLHNDSAPSFPD-------IPAYRRLIGRLLY-LNTTRPDI 289
Query: 1089 GH 1090
+
Sbjct: 290 TY 291
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 174 bits (441), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/447 (27%), Positives = 201/447 (44%), Gaps = 56/447 (12%)
Query: 277 GEDDALICSLESKQ-ESWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKG 335
G A CS SW++DSGA+ H K + V L N + G
Sbjct: 334 GIHSAFSCSFHVNSIPSWIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTSIYVHYAG 393
Query: 336 VVKIKLNGSTWELKDVRHIPDLRKNLISVGQLASDGYTTTFHGDNWKITKDAM---MVAR 392
V L V + P+ + NLISV ++ + N + +D M+
Sbjct: 394 NVHFT---PYLHLTHVLYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGL 450
Query: 393 GSKSGTLYSTGGASYFI---------------------------------AVAANSETPN 419
G KS LY + +F+ V +S P
Sbjct: 451 GDKSDGLYKL--SMHFVNQQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPE 508
Query: 420 --IWHQRLGHMSMKGMKILHSQGKLPGLQSIEID---MCEDCIFGKQKRVSFQTNRRTPK 474
+WH RLGH+S + + + +L SI +D C+ C F + K++ F + +
Sbjct: 509 SALWHFRLGHLSNQRLSTM---SRL--YPSIIVDNKAACDICHFARHKKLPF-PHSSSHA 562
Query: 475 KEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVWVYFLKYKSEVFDAFKIWKAMVE 534
K +L+H D+WGP ++ + G YF+T +D+H+R +W+ LK K+EV K + A++E
Sbjct: 563 NSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIE 622
Query: 535 NETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQHNGVAERMNRTLTERAR 594
N+ + K +RTDNG E+ F GI +R+ TPQ NG ER ++ + R
Sbjct: 623 NQFHITPKIIRTDNGSEF---LLHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGR 679
Query: 595 SLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYV 654
+L QS LP FW+ A A +LINR P++ L+++ P ++ ++ +VFGC+ Y
Sbjct: 680 ALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYA 739
Query: 655 HISDHGRNKLDPKSKKCIFIGYGGDEF 681
R KL+ +++K +F+GY F
Sbjct: 740 SSLQSHRTKLETRARKSVFLGYKNFYF 766
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 193/469 (41%), Gaps = 121/469 (25%)
Query: 776 LLLTDGGEPECFEEACQTADASKWELAMKDEIKSLISNQTWELAELPVGKKALHNKWVYR 835
L ++ EP F++A +W+LAM E+ +L + TW + P + +KW++R
Sbjct: 145 LAISSDIEPSSFKQA---QSDPRWQLAMSPELSALEATGTWIFVDPPPNISPIGSKWIFR 201
Query: 836 VKEEHDGSKQKEGVDYTEIFAPVVKLNTIRSVLSIVASEGLYLEQLDVKTAFLHGDLDKE 895
+ D FLHGDL ++
Sbjct: 202 LN--------------------------------------------DANNTFLHGDLQED 217
Query: 896 IYMYQPEGFSEKGKENMVCKLKKSLYGLKQAPRQWYRKFDGFMHREGFQRCNADHCCYFK 955
+YM+ P+G S + VCKL KSLYGLKQA R+W+ K + GF + +ADH +
Sbjct: 218 VYMHPPQGVSPP-RPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASADHSFLIR 276
Query: 956 RFKTSYIILLLYVDDMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITRDKQKQ 1015
TS+ LL+YV +
Sbjct: 277 ASPTSFTALLIYV------------------------------------------AHSSK 294
Query: 1016 VLQLSQAEYINRVLQRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIPYASAIG 1075
+ L Q +Y +L + K VSTPL L D P ++ + Y IG
Sbjct: 295 GISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDD------VLAYRCLIG 348
Query: 1076 SLMYAMVCTRPDIGHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKCLYFGK-GELKV 1134
L+Y + TRPDI A +S++M+KP H +LRYL+ + L+F + E+++
Sbjct: 349 CLLY-LTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQL 407
Query: 1135 QGYVDADYGGDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTXASKEMI 1194
G+ DAD+GG +D RRS + + + + + + +++ M
Sbjct: 408 LGFSDADWGGCVDSRRS------------LAFQEAIHRFLFFLRSGISCFSISHPRTPMA 455
Query: 1195 WLQGLLTELGFMRKKNILYSDSQSAIHLAKNSTFHSRTKHIGLRYHFIR 1243
+ + +ILY D+QSA+H+A N F+ RTKH+ + H +R
Sbjct: 456 HI-----------RLSILYCDNQSALHIAANPVFYERTKHLDIDCHIVR 493
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 218/493 (44%), Gaps = 68/493 (13%)
Query: 293 WVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIKLNGSTWELKDVR 352
W++DSGA+ H L Y + V L + + G + + L +V
Sbjct: 362 WLVDSGANEHICRDLNLFTSYHAISPSIVTLPDGSIVTVTHAGYINF---SPQFYLTNVL 418
Query: 353 HIPDLRKNLISVGQLASDGYTTTFHGDNWKITKDAM---MVARGSKSGTLYSTGGASYFI 409
+ R NL+SV ++ T N I +D+ M+ ++ LY G S
Sbjct: 419 YSSSFRLNLMSVHKVCESLSCTFQFLPNQCIIQDSTSLKMIGLANQQDGLYKLGHLS--- 475
Query: 410 AVAANSETPNIWHQRLGHMSMKGMKILHSQGKLPGLQSIEIDMCEDCIFGKQKRVSFQTN 469
HQR+ MS I+ +C+ C F KQK + F +
Sbjct: 476 ------------HQRMNMMSSLYSNIVSDNKN---------SVCDICHFAKQKHLPFSIS 514
Query: 470 RRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVWVYFLKYKSEVFDAFKIW 529
+ EL+H D+WGP ++SSI G YF+T +D+HSR +W+ LK KS V K +
Sbjct: 515 T-SHATSNFELLHLDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSF 573
Query: 530 KAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEH-GIKMERTVPGTPQHNGVAERMNRT 588
MV+ + + K +R+DNG E+ F YE GI +++ TPQ NG ER +
Sbjct: 574 IKMVQTQFHVTPKCIRSDNGPEFLILSF----YESLGILHQKSCVETPQQNGRVERKHHH 629
Query: 589 LTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVF 648
+ R+L QS LP +W+ A+ A +LINR P+ LE + P + K + F
Sbjct: 630 ILNVGRALLYQSKLPASYWSYALLHAVFLINRKPTPLLEGQSP---YYALHHKFPDIDTF 686
Query: 649 GCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIRSRDVVFNERIM-Y 707
+N+ +++K +F+GY G+ L D ++++ SR VVF+E + Y
Sbjct: 687 ------------KNQASTRARKTVFLGYKSGYKGFILLDIHSREIFVSRHVVFHEYFLPY 734
Query: 708 KNRHDTVASDSEQSGPVFVEVD---DIPKSLPNELVEDP---------QSEESTDTPQTS 755
+ +++ S E P+ V D P +P +++D S ++T++P S
Sbjct: 735 PSNSESITSQWEYFSPIQAVVTKSVDTPPPIP--IIDDELYSSSSSPITSPDTTNSPINS 792
Query: 756 PPKVLRSERPPKP 768
P + PP P
Sbjct: 793 PDTT--NSPPPSP 803
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 195/439 (44%), Gaps = 54/439 (12%)
Query: 263 HQEGKLEANVASTLGEDDALICSLESKQESWVLDSGASFHATSQKELLERYAPGNFGKVY 322
H +++ T G + CSL + W++DSGA+ H S L Y V
Sbjct: 359 HVATSFPSSIDFTSGINTIFSCSLHVPSDHWLIDSGANEHICSSLHLFHSYYRIKPICVN 418
Query: 323 LGNDQPCNIVGKGVVKIKLNGSTWELKDVRHIPDLRKNLISVGQLA-SDGYTTTFHGDNW 381
L N + G V + + V + P + LISV ++ S Y F + +
Sbjct: 419 LPNGSSVIVQYAGTVVF---SPHFHITHVLYSPSFKVYLISVSKICQSLPYHVHFLLNTY 475
Query: 382 KI--TKDAMMVARGSKSGTLY------STGGASYFIAVAANSET---------------- 417
I K M+ G+ LY ++FI+ A +
Sbjct: 476 VIQDVKTQKMIGLGNLCDGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSI 535
Query: 418 --PNIWHQRLGHMSMKGMKILHSQGKLPGLQSIEIDMCEDCIFGKQKRVSFQTNRRTPKK 475
IWH RLGH+S + + ++HS SI ID K S ++
Sbjct: 536 PSNAIWHFRLGHLSNQRLSMMHSL-----YSSITID---------NKAYSIASS------ 575
Query: 476 EKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVWVYFLKYKSEVFDAFKIWKAMVEN 535
K EL+H D+WGP +V+S+ G YF+T +D+ SR +WV LK KSEV + K + ++
Sbjct: 576 -KFELLHFDIWGPLSVTSVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHT 634
Query: 536 ETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQHNGVAERMNRTLTERARS 595
+ K +R+DNG E+ +F GI +++ TPQ NG ER ++ + AR+
Sbjct: 635 HYQITPKYIRSDNGPEF---LIPEFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARA 691
Query: 596 LRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVH 655
L QS LP FW+ AV A +LIN+ P+ + K P ++ ++ +VFGC+ +
Sbjct: 692 LLFQSKLPNFFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFAS 751
Query: 656 ISDHGRNKLDPKSKKCIFI 674
R+KL +++K IF
Sbjct: 752 TLLAQRSKLQSRARKSIFF 770
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 7/263 (2%)
Query: 447 SIEID---MCEDCIFGKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTF 503
SI +D C+ C F + K++ F + K +L+H D+WGP ++SI G YF+T
Sbjct: 7 SIIVDNKAACDVCHFARHKKLPFSHSSSH-ASSKFQLLHFDIWGPLAINSIHGHKYFLTI 65
Query: 504 IDNHSRKVWVYFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYE 563
+D+H+R +W+ LK K+EV K + M+EN+ + K +RTDNG E+ +F
Sbjct: 66 VDDHTRFLWIILLKTKAEVPMHIKNFIVMIENQFHVTPKIIRTDNGSEF---LLHEFYAS 122
Query: 564 HGIKMERTVPGTPQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPS 623
GI + + TPQ NG ER ++ + R+L QS LP FW+ A A +LINR +
Sbjct: 123 KGILHQSSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITT 182
Query: 624 VPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGY 683
L + P + ++ +VFGC+ Y KL+ +++K +F+GY GY
Sbjct: 183 PVLHNFSPYHLLYDSPPDITTFKVFGCLCYASSLQSHITKLETRARKSVFLGYKLGFKGY 242
Query: 684 RLWDEENKKVIRSRDVVFNERIM 706
L+D +++ SR VVF+E ++
Sbjct: 243 VLYDLHTREIFISRHVVFHECVL 265
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 163/309 (52%), Gaps = 25/309 (8%)
Query: 964 LLLYVDDMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITRDKQKQVLQLSQAE 1023
+L+YVDD+++AG D + I N K+ L + F MKDLG K LG+++ R L + Q +
Sbjct: 3 VLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANG--LFMCQRK 60
Query: 1024 YINRVLQRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIPYASAIGSLMYAMVC 1083
Y +L M + KP + P+ + +L D+ P + + Y I L+Y +
Sbjct: 61 YTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSR------YRRLISRLIYLTI- 113
Query: 1084 TRPDIGHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKCLYFGK-GELKVQGYVDADY 1142
P+I ++V +++ +LRYL+ + + + K +L++ Y D+D+
Sbjct: 114 MHPEITYSVHILTMR--------------VLRYLKSSPGQGIILPKENDLQLVAYCDSDW 159
Query: 1143 GGDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTXASKEMIWLQGLLTE 1202
RRST+ Y+ +G+ + W ++ Q V+ S++EAEY A+ A E+IWL+ LL+
Sbjct: 160 ASCPLTRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSS 219
Query: 1203 LGF-MRKKNILYSDSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLENDVLKLEKIQGNKN 1261
L +L D+Q+A+HLA N +H RTKHI + HFIR+ L+ + + K
Sbjct: 220 LQVHYDSPTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQ 279
Query: 1262 PADMLTKAV 1270
AD+ TKA+
Sbjct: 280 QADIFTKAL 288
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 156 bits (394), Expect = 6e-38, Method: Composition-based stats.
Identities = 94/269 (34%), Positives = 152/269 (56%), Gaps = 13/269 (4%)
Query: 953 YFKRFKTSYIILLLYVDDMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITRDK 1012
+ K +S+ ILL+YVDD+++AG ++E +++K L F +KDLG K +LG+++ K
Sbjct: 2 FTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHSK 61
Query: 1013 QKQVLQLSQAEYINRVLQRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIP-YA 1071
Q + L Q +Y +L +KPVST + +L D SP E+ IP Y
Sbjct: 62 QG--ISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYED-------IPSYR 112
Query: 1072 SAIGSLMYAMVCTRPDIGHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKCLYFGK-G 1130
IG L+Y + TRPDI +S+++SKP +TH A +L+YL+ K L+F +
Sbjct: 113 RLIGRLLY-LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNS 171
Query: 1131 ELKVQGYVDADYGGDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTXAS 1190
L +QG+ D D+ G +D RRS + F +G + + W ++ Q V+ S++EAEY A+ A+
Sbjct: 172 SLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASAT 231
Query: 1191 KEMIWLQGLLTELGFMRKK-NILYSDSQS 1218
E+ W+ LL +L K +L+ D+Q+
Sbjct: 232 CELQWILYLLKDLNIQSSKLPVLFCDNQN 260
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 156 bits (394), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 124/480 (25%), Positives = 207/480 (43%), Gaps = 68/480 (14%)
Query: 274 STLGEDDALICSLESKQESWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVG 333
S G + C L K W++DSGA+ H S LL + V L N +
Sbjct: 314 SYAGINTIFPCCLHVKSNYWLIDSGANEHICSSLSLLHSFYIIKPLHVTLPNGTSVLVHY 373
Query: 334 KGVVKIKLNGSTWELKDVRHIPDLRKNLISVGQLASDGYTTTFHGDNWKITKDAMMVARG 393
G V + + + DL L + AS ++ F +N++ K +
Sbjct: 374 AGTVSFSPHFHI--TNKMIGLGDLCDGLCRLRIPASSNFSHCF-VNNFQCNKVS------ 424
Query: 394 SKSGTLYSTGGASYFIAVAANSETPN--IWHQRLGHMSMKGMKILHSQGKLPGLQSIEID 451
Y + + ++ N P+ +WH RLGH+S + + +H P +
Sbjct: 425 ------YESCNS---VSCNNNVHIPSTALWHFRLGHLSNQRLSQMHHL--YPDIHVDNKF 473
Query: 452 MCEDCIFGKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKV 511
+C+ C F KQ+++ + ++ EL++ D+WGP SI G+ YF+T +D+HSR +
Sbjct: 474 ICDICHFAKQRKLPYNSSTSI-ASSNFELLYLDIWGPLAKVSIHGQRYFLTIVDDHSRFL 532
Query: 512 WVYFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERT 571
W K KSEV + + +++N+ + K +R+DNG + F GI +R+
Sbjct: 533 WTILFKNKSEVPSHIQHFIYLIQNKHKVTPKIIRSDNGHVF---LLSAFYASQGIIHQRS 589
Query: 572 VPGTPQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIP 631
TPQHN +LINR P++ LE+K P
Sbjct: 590 CVETPQHN-----------------------------------VFLINRVPTLVLENKSP 614
Query: 632 EEVWSGKEVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENK 691
+V ++ +VFGC+ Y R KL +++K +F+GY G L+D K
Sbjct: 615 YQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSRARKSVFLGYKSGYKGSFLYDLNTK 674
Query: 692 KVIRSRDVVFNERIMYKNRHDTVASDSEQ------SGPVFVEVDDIPKSLPNELVEDPQS 745
++ SR+V F+E I+ N +T S + Q + FV+V +P + P+ + P S
Sbjct: 675 EIFMSRNVTFHESILPYNSTNTHFSSNWQYFTPSHTQTPFVDV-PVPSTFPSSPIITPSS 733
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
Query: 462 KRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVWVYFLKYKSE 521
K +F+ + +P + + + +WGP +V+S+ G YF+T +D+H+R +WV LK K+E
Sbjct: 498 KSSNFEFSALSPSSCNVVSISNYIWGPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAE 557
Query: 522 VFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGTPQHNGV 581
V K + M++N K +RTDNG E+ F HGI +++ TPQ NG
Sbjct: 558 VSSHVKNFITMIQNHFHTTPKFIRTDNGPEF---MLPSFYASHGIIHQKSCVETPQQNGR 614
Query: 582 AERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHK 629
ER ++ + R+L QS LP FW+ A++ A +LINR P+ PL H
Sbjct: 615 VERKHQHILNVGRALLYQSKLPPSFWSYAIHHAVFLINRVPT-PLLHN 661
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 39/192 (20%)
Query: 516 LKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTVPGT 575
+K++S+ FK A++EN+ G K+K+L+ DNG E+ + F +FC GI V T
Sbjct: 1 MKHRSDASKNFKQLNALLENQFGKKVKRLQIDNGLEFCWSEFNEFCKTEGISRHHMVRNT 60
Query: 576 PQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIPEEVW 635
PQ N VA+RMN+TL ERAR + +GL + FW E
Sbjct: 61 PQQNSVAKRMNQTLLERARCMLSNAGLTRTFWGET------------------------- 95
Query: 636 SGKEVKLSHLRVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIR 695
FGC Y +++ KL+ ++KK +F+GYG YR+W +VI
Sbjct: 96 -----------GFGCTVYYRVNE---GKLESRAKKRVFVGYGDGVKEYRIWSPSENRVIL 141
Query: 696 SRDVVFNERIMY 707
SR+VVF+E +M+
Sbjct: 142 SRNVVFDEIVMF 153
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 453 CEDCIFGKQKRVSFQTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYFVTFIDNHSRKVW 512
C C+ GK R +F++ + K L +VHSD++GP V + G YF+TF+D +S+ +W
Sbjct: 15 CNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDEYSKMLW 74
Query: 513 VYFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYEDTRFKKFCYEHGIKMERTV 572
+Y +K KS+ + FK +K + E ++G+K+K L T GGEY F+ +C GI E T
Sbjct: 75 LYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSKDFESYCTNQGIIHEVTT 134
Query: 573 PGTP 576
P TP
Sbjct: 135 PYTP 138
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 60/87 (68%)
Query: 572 VPGTPQHNGVAERMNRTLTERARSLRVQSGLPKXFWAEAVNTAAYLINRGPSVPLEHKIP 631
V TPQHNGVAERMN+TL E+AR + GL + FWAEAVNT YL+NRGP + K
Sbjct: 2 VRNTPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTL 61
Query: 632 EEVWSGKEVKLSHLRVFGCVAYVHISD 658
E+W GK V S+LRVFGC Y H+++
Sbjct: 62 YELWPGKSVDYSNLRVFGCTVYYHVNE 88
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 36/249 (14%)
Query: 964 LLLYVDDMLVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITRDKQKQVLQLSQAE 1023
+++YV DM+V G + ++ L L+ F +KDLG K LG+++ + + L ++Q++
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEV-KPQSNGSLLITQSK 59
Query: 1024 YINRVLQRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIPYASAIGSLMYAMVC 1083
Y+ +L + +M EAK + +P+ S +LSKD S T + + S + +L YA
Sbjct: 60 YVRDLLAKTDMQEAKSLPSPMISDLKLSKDGS--TPFSDPTLCR----SIVRALQYA--- 110
Query: 1084 TRPDIGHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKCLY---FGKGELKVQGYVDA 1140
+ +G +S +LR+L+GT L L + Y DA
Sbjct: 111 ------NLIGPLSN---------------VLRHLKGTLSWGLLVRPIPTYPLSILAYCDA 149
Query: 1141 DYGGDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTXASKEMIWLQGLL 1200
D+G D D R C G + W ++ Q ++A S+TEAEY ++ A E++W++
Sbjct: 150 DWGSDPDDRSVDACVFL--GPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKTYG 207
Query: 1201 TELGFMRKK 1209
L ++KK
Sbjct: 208 ARLKVIQKK 216
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%)
Query: 912 MVCKLKKSLYGLKQAPRQWYRKFDGFMHREGFQRCNADHCCYFKRFKTSYIILLLYVDDM 971
MV L+KSLYGLKQA R WY K + GFQ +ADH + ++ ++ +L+YVDD+
Sbjct: 1 MVYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDL 60
Query: 972 LVAGPDINEIKNLKKQLSKEFDMKDLGLAKKILGMQITR 1010
++AG D + I N K+ L + F MKDLG K LG+++ R
Sbjct: 61 VIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELAR 99
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 1113 ILRYLRGTTEKCLYFGK-GELKVQGYVDADYG-GDIDHRRSTTCYIFTVGTTAVCWMSQV 1170
+L YL+G K L+F + L++QGY +AD+ G D RRS + F CW
Sbjct: 3 VLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCF------FCW---- 52
Query: 1171 QKIVALSTTEAEYVAVTXASKEMIWLQGLLTELGF-MRKKNILYSDSQSAIHLAKNSTFH 1229
S++EAEY A+ A+ E+ L LL +L K +LY D+QSAI++A N FH
Sbjct: 53 ------SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFH 106
Query: 1230 SRTKHIGLRYHFIRSLLENDVLKLEKIQGNKNPADMLTKAVTIDKLKLCSTSVGLLE 1286
TKH+ + H +R L+ + KL I AD TK++ + +G+L+
Sbjct: 107 ECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGMLD 163
>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
EGN_Mt090430 20090702
Length = 532
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/406 (24%), Positives = 161/406 (39%), Gaps = 49/406 (12%)
Query: 8 SKIEKFDGADFGFWKMQIEDYLYQKGLFQPLSGTKPEAMKE-----EDWNLLDRQALGVI 62
S+IE F G +F W ++ L G+ L+ KP+ K E WN ++ I
Sbjct: 39 SRIEVFKGQNFRRWNERVFTLLDVHGVASVLTDVKPDEAKSDAKQIEKWNNANKVCRHTI 98
Query: 63 RLTLSRNVAFNIAKEKTTAGLMAALSNMYEKPSAANKVHLMRRLFNLRMTESASVAQH-- 120
T+S AL ++Y A + N++ T + Q
Sbjct: 99 LSTISD-----------------ALFDVYCSYKVAKDIW---DNMNVKYTAEEATKQKFV 138
Query: 121 LNELNTVTTQLSSVEIEFDEEVRALILLSSLPESWNATVTAVXXXXXXXXXXFDDVRDLV 180
+NE + + +L + I + A L+ LP SW+ + +D+ +
Sbjct: 139 INEYHQLIEELKAENIILPDVFVAAALVEKLPSSWDDYKQQLKHKHKQMS--LNDLIRHI 196
Query: 181 LSEEIRRRESGEPSTSSVLHTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSNFNITK 240
+ E+ R+E G ++ NP NF
Sbjct: 197 IIEDTSRKECGAARAKAL-----ESRANLIQNNARKQQRYENKSDHALKVTNP-NFK-AN 249
Query: 241 TIACWNCGKTGHYKNQCK-NAPKHQEGKLEANVAS---TLGEDDALICSLESKQ------ 290
C+ CGK GH C+ Q K +AN+ +DD +I ++ SK
Sbjct: 250 LGECYVCGKKGHKAYHCRYRKVNGQPPKPKANLTQGDDKKYDDDDVIAAVISKVHLVNDV 309
Query: 291 ESWVLDSGASFHATSQKELLERYAP--GNFGKVYLGNDQPCNIVGKGVVKIKL-NGSTWE 347
+ WV+DSGA+ H +++E Y + +VYLG+ + + GKG V +KL +G T
Sbjct: 310 QKWVVDSGATRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGKTLA 369
Query: 348 LKDVRHIPDLRKNLISVGQLASDGYTTTFHGDNWKITKDAMMVARG 393
L DV ++P +R NLISV L G +F D ++K+ + V G
Sbjct: 370 LSDVLNVPTIRTNLISVALLNKVGVKVSFESDKMVMSKNNVFVGNG 415
>IMGA|Medtr3g044270.1 Peptidase S8 and S53, subtilisin, kexin,
sedolisin chr03_pseudomolecule_IMGAG_V3
12336621-12336989 H EGN_Mt090430 20090702
Length = 122
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 292 SWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIKL-NGSTWELKD 350
SWV+DSG S H S +++ Y G FG V L ++ VG V +++ NG+ LKD
Sbjct: 29 SWVIDSGISVHVISTRDVFSSYTSGEFGDVKLAHEGVLKCVGHEDVNLEMSNGAKLTLKD 88
Query: 351 VRHIPDLRKNLISVGQLASDGYTTTFHGDNWKIT 384
+H+ D++ NL+SV +L +GY + F D+WKI+
Sbjct: 89 EKHVLDIQLNLLSVAKLCDEGYDSLFLRDSWKIS 122
>IMGA|Medtr5g082240.1 Peptidase S8 and S53, subtilisin, kexin,
sedolisin chr05_pseudomolecule_IMGAG_V3
30911334-30910966 H EGN_Mt090430 20090702
Length = 122
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 292 SWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIKL-NGSTWELKD 350
SWV+DSG S H S +++ Y G FG V L ++ VG V +++ NG+ LKD
Sbjct: 29 SWVIDSGISVHVISTRDVFSSYTSGEFGDVKLAHEGVLKCVGHEDVNLEMSNGAKLTLKD 88
Query: 351 VRHIPDLRKNLISVGQLASDGYTTTFHGDNWKIT 384
+H+ D++ NL+SV +L +GY + F D+WKI+
Sbjct: 89 EKHVLDIQLNLLSVAKLCDEGYDSLFLRDSWKIS 122
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 388 MMVARGSKSGTLYSTGGASY--FIAVAA----NSETPNIWHQRLGHMSMKGMKILHSQGK 441
+++A K GTLY G + + VA+ + +WH RLGHMS +GM+IL
Sbjct: 65 IVMAASVKRGTLYFLQGTTLTDYGVVASFEIDQEDMTKLWHMRLGHMSERGMQILAKDNL 124
Query: 442 LPGLQSIEIDMCEDCIFGKQKRVSF-QTNRRTPKKEKLELVHSDVWGPTTVSSIGGKHYF 500
L G + + + E FGK+ R F + RT K L+ +H D W P+ V S+GG YF
Sbjct: 125 LYGHKIKDPGLSEHYAFGKRHRNKFLKVIHRT--KGTLDYIHDDCWEPSRVESLGGHKYF 182
Query: 501 VTFIDNHSR 509
++ ID++SR
Sbjct: 183 LSLIDDYSR 191
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 41/144 (28%)
Query: 803 MKDEIKSLISNQTWELAELPVGKKALHNKWVYRVKEEHDGSKQK-------------EGV 849
M+ EI +L + TW+L +LP K + +W+Y++K DGS Q+ EG
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 850 DYTEIFAPVVKLNT----------------------------IRSVLSIVASEGLYLEQL 881
DY + ++PV KL T +R+V+++ + ++ +L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 882 DVKTAFLHGDLDKEIYMYQPEGFS 905
D +AFLHGDL +++YM P+G +
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGIT 144
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 1144 GDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTXASKEMIWLQGLLTEL 1203
GD D ++STTCY+F +G + W S+ Q IVALS++EA+YVA + A+ + +W++ LL EL
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 1204 GFMRKKNI-LYSDSQSAIHLAKNSTFHSR 1231
I L D++ AI LA H +
Sbjct: 126 NAFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%)
Query: 494 IGGKHYFVTFIDNHSRKVWVYFLKYKSEVFDAFKIWKAMVENETGLKIKKLRTDNGGEYE 553
+GG YFV FID++S W+Y +K + E+ + + M++ + IK R DN EY
Sbjct: 1 MGGARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEYR 60
Query: 554 DTRFKKFCYEHGIKMERTVPGTPQHNGVAERMNRTLTERARSLRVQSGLP 603
D++ F E G E + P T Q G AER +R + + ++ + + P
Sbjct: 61 DSKLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISASCP 110
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 1174 VALSTTEAEYVAVTXASKEMIWLQGLLTELGF-MRKKNILYSDSQSAIHLAKNSTFHSRT 1232
V+ S++EAEY A+ E+ WL LL + +LY DSQSA H+A N++FH RT
Sbjct: 249 VSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHERT 308
Query: 1233 KHIGLRYHFIRSLLENDVLKLEKIQGNKNPADMLTKAV 1270
KHI L H +R L+ + L + ++ AD+LTK +
Sbjct: 309 KHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPL 346
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 411 VAANSETPNIWHQRLGHMSMKGMKILHSQGKLPGLQSIEIDMCEDCIFGKQKRVSFQTNR 470
+ ++E +WH+RL HM K M L L + + + C+ CI K+ +VSF+ +
Sbjct: 1 MVESTEKVELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFH- 59
Query: 471 RTPKKEK-LELVHSDVWGPTTVSSIGGKHYFVTFIDNH 507
+PK+ L+LVH ++GP +IGG YF++FID+H
Sbjct: 60 -SPKRPTILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 411 VAANSETPNIWHQRLGHMSMKGMKILHSQGKLPGLQSIEIDMCEDCIFGKQKRVSFQTNR 470
+ ++E +WH+RL HM K M L L + + + C+ CI K+ +VSF+ +
Sbjct: 1 MVESTEKVELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFH- 59
Query: 471 RTPKKEK-LELVHSDVWGPTTVSSIGGKHYFVTFIDNH 507
+PK+ L+LVH ++GP +IGG YF++FID+H
Sbjct: 60 -SPKRPTILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr4g104320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711151-22711574 H
EGN_Mt090430 20090702
Length = 99
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 28/126 (22%)
Query: 803 MKDEIKSLISNQTWELAELPVGKKALHNKWVYRVKEEHDGSKQKEGVDYTEIFAPVVKLN 862
M +E+ S+ N+T EL L +KA+ KWVY++K H+G
Sbjct: 1 MLEELSSIKKNKTLELVGLSTDEKAIGVKWVYKLKTNHEGK------------------- 41
Query: 863 TIRSVLSIVASEGLYLEQLDVKTAFLHGDLDKEIYMYQPEGFSEKGKENMVCKLKKSLYG 922
IV L+ D+K FL+G L++ +++ QP G K KE V KL K LYG
Sbjct: 42 -------IVKKVPLF--HFDMKLYFLNGSLEETMFVKQPSGLEIKCKEENVYKLHKDLYG 92
Query: 923 LKQAPR 928
LKQAPR
Sbjct: 93 LKQAPR 98
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 1129 KGELKVQGYVDADYGGDIDHRRSTTCYIFTVGTTAVCWMSQVQKIVALSTTEAEYVAVTX 1188
KGE K++GY D+D GD RRST+ +F A+ W ++ Q I ALS+ EAEY+A T
Sbjct: 8 KGESKLEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGTF 67
Query: 1189 ASKEMIWLQGLLTEL 1203
A+ + IWL ++ EL
Sbjct: 68 AACQAIWLDNVIKEL 82
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 13/130 (10%)
Query: 1017 LQLSQAEYINRVLQRFNMNEAKPVSTPLASHFRLSKDQSPQTEEERKDMAKIPYASAIGS 1076
L L Q +Y + +L++FNM + T ++ + +EE + + + IGS
Sbjct: 10 LILHQTDYASEILKKFNMLDCNSTITHADANIIY------EVKEEDEGVDPTMFRRLIGS 63
Query: 1077 LMYAMVC-TRPDIGHAVGVVSRYMSKPGKTHWEAVKWILRYLRGTTEKCLYF----GKGE 1131
L Y +C +RP I + VG+VSR+MS P KT++ + K ILRY+ T + + F +
Sbjct: 64 LRY--LCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATEQ 121
Query: 1132 LKVQGYVDAD 1141
L ++GY DAD
Sbjct: 122 LDMEGYSDAD 131
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 66.6 bits (161), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 898 MYQPEGFSEKGKENMVCKLKKSLYGLKQAPRQWYRKFDGFMHREGFQRCNADHCCYFKRF 957
M QP GF N VCKL+KSLYGLKQAP+ W++ F+ FQ +D +
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 958 KTSYIILLLYVDDM 971
++ L+YVDD+
Sbjct: 61 ANTFAYFLVYVDDI 74
>IMGA|Medtr1g076760.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 15437706-15436255 H
EGN_Mt090430 20090702
Length = 186
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 608 AEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDHGRNKLDPK 667
EA++T +++N PSV L++++ +++W K + HL VFGC YV K
Sbjct: 110 GEALSTIVHVLNLSPSVSLQYEVRDKIWLRKNISYDHLCVFGCKTYV------------K 157
Query: 668 SKKCIFIGYGGDEFGYRLWDEENKKVI 694
S+ C+F+ Y D YR +D + KK+I
Sbjct: 158 SQHCMFLCYDLDGADYRFYDCDMKKLI 184
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 332 VGKGVVKIKL-NGSTWELKDVRHIPDLRKNLISVGQLASDGYTTTFHGDNWKITKDAMM 389
VG G VK K+ NG+ LKDV ++PD+R NL+SV +L +GY F +WK++K +M+
Sbjct: 51 VGLGEVKWKMSNGTKLTLKDVNYVPDIRLNLLSVAKLRDEGYDRLFSQYSWKLSKGSMI 109
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 881 LDVKTAFLHGDLDKEIYMYQPEGFSEKGKENMVCKLKKSLYGLKQAPRQWYRK 933
+DV AFLHGDL +++YM P GF +VCKL+KS Y LK AP+ W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGF-HTSSSRLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr4g104330.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711685-22712637 H
EGN_Mt090430 20090702
Length = 196
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 1057 QTEEERKDMAKIPYASAI----GSLMYAMVCTRPDIGHAVGVVSRYMSKPGKTHWEAVKW 1112
++E E D+ K+ Y I S M + DI A+G+ SR+MSKP KTH+ K
Sbjct: 22 KSEFEMTDLGKLAYFLGIKFMETSRALVMHQEKLDICFAIGLASRFMSKPMKTHFLVAKC 81
Query: 1113 ILRYLRGTTEKCLYFGKGE----LKVQGYVDADYGGDIDHR---RSTTCYIF 1157
ILRY++G + + F + L+++G++D D+ GD R + TC F
Sbjct: 82 ILRYIKGKIQYGILFPISQMTEKLELEGFLDDDWYGDEVEREGVQVVTCSSF 133
>IMGA|Medtr4g110620.1 polyprotein-like, related
chr04_pseudomolecule_IMGAG_V3 25158785-25159321 H
EGN_Mt090430 20090702
Length = 178
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 46 MKEEDWNLLDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSNMYEKPSAANKVHLMRR 105
M+ + W LD + VI L L +N+ N+ ++ L +Y+ +N++ +
Sbjct: 1 MEADKWEELDLRTASVILLCLPKNLPANVQNLRSAKEFCKKLEGLYQAKKISNQLFPKEK 60
Query: 106 LFNLRMTESASVAQHLNELNTVTTQLSSVEIEFDEEVRALILLSSLPESWNATVTAVXXX 165
NL M E + HL LN + +L S++++ +E +AL L+ SLP + +
Sbjct: 61 FHNLHMDEGTKIFNHLCTLNDIIFELESIKVKIYDEDKALSLILSLPPFY--VHLKLVLM 118
Query: 166 XXXXXXXFDDV--RDLVLSEEIRRRESGEPSTSSVL 199
F++V + ++SEE RR +S E ++SS++
Sbjct: 119 YGKESLSFEEVATKIKIISEE-RRMKSDESTSSSLM 153
>IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related
chr05_pseudomolecule_IMGAG_V3 21011474-21012209 E
EGN_Mt090430 20090702
Length = 210
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 287 ESKQESWVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIKLNGSTW 346
++K ESW+LDSGAS H T + + V L N + +G VK+
Sbjct: 30 KTKLESWILDSGASNHMTGTLQYMHDVKEVIGCPVGLPNCRTTTCTKEGTVKLT---DGL 86
Query: 347 ELKDVRHIPDLRKNLISVGQLASDGYTTTFHGDNWKITKD---AMMVARGSKSGTLYSTG 403
L++V ++P L NLIS+ QL + N+ +D M++ G + LY
Sbjct: 87 RLENVLYVPKLNCNLISISQLLDELNCNVQFNGNFCAIQDRTSKMLIGAGEQRDGLY--- 143
Query: 404 GASYFIAV----AANSETPN---IWHQRLGHMSMKGMKIL 436
+F V A E N +WH+RLGH S K +++
Sbjct: 144 ---FFREVPKVKACKVEGTNQLEVWHKRLGHPSWKTTQLV 180
>IMGA|Medtr5g089840.1 copia LTR rider, related
chr05_pseudomolecule_IMGAG_V3 34952559-34951978 H
EGN_Mt090430 20090702
Length = 154
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 87 LSNMYEKPSAANKVHLMRRLFNLRMTESASVAQHLNELNTVTTQLSSVEIEFDEEVRALI 146
L +Y+ +N++ L + NLRM E ++ HL+ LN + ++L S+E++ D+E + L
Sbjct: 25 LEGLYQAKGISNRLLLKEQFHNLRMDEGTKISDHLSTLNNIVSELESIEVKIDDEDKTLR 84
Query: 147 LLSSLPESWNATVTAVXXXXXXXXXXFDDVRDLVLSEEIRRRESGEPSTSSVL 199
++ SLP S+ + F++V ++SEE+ + S E ++SS+L
Sbjct: 85 IILSLPPSYVHLKPVL--MYGKESLSFEEVATKIISEEMTMK-SDESTSSSML 134
>IMGA|Medtr7g116810.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 27118605-27118065 H
EGN_Mt090430 20090702
Length = 141
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
Query: 646 RVFGCVAYVHISDHGRNKLDPKSKKCIFIGYGGDEFGYRLWDEENKKVIRSRDVVFNERI 705
++FGC ++V+I GR+KLDP++ KC+FIGY + GY + + K + +I
Sbjct: 10 KIFGCTSFVYIQSDGRSKLDPRALKCVFIGYSSTQKGYICYHPPSHK--------YFAKI 61
Query: 706 MYKNRHDTVAS--DSEQSGPVFVEV 728
+ R + V + D E+ G V V+V
Sbjct: 62 EAETRGNNVETKVDYEKDGNVEVDV 86
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1212 LYSDSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLENDVLKLEKIQGNKNPADMLTKAVT 1271
L SD++SAI+LAKNS FH + KH+ R+HF+R + + L +E D+ TKA+
Sbjct: 14 LKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQLTDLFTKALK 73
Query: 1272 IDK-LKL 1277
D+ LKL
Sbjct: 74 RDQFLKL 80
>IMGA|Medtr6g036460.1 hypothetical protein
chr06_pseudomolecule_IMGAG_V3 8068482-8067914 H
EGN_Mt090430 20090702
Length = 155
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 46 MKEEDWNLLDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSNMYEKPSAANKVHLMRR 105
M+ + W LD +A+ IRL L++NV N+ + L L +Y+ +N++ L +
Sbjct: 1 MEADKWEELDLRAVSAIRLCLAKNVLVNVQNLSSAKELWEKLKGLYQAKDISNRLLLKEQ 60
Query: 106 LFNLRMTESASVAQHLNELNTVTTQLSSVEIEFDEEVRALILLSSLPESWNATVTAVXXX 165
NLRM E S+E++ D+E +AL + SLP S+
Sbjct: 61 FHNLRMDE------------------ESIEVKIDDEDKALRFILSLPPSY--VHLKPVFM 100
Query: 166 XXXXXXXFDDVRDLVLSEEIRRRESGEPSTSSVLHT 201
F++V ++ EE R + S+ S+L T
Sbjct: 101 YGKESLSFEEVATKIIYEERRMKSDESTSSRSMLLT 136
>IMGA|Medtr6g036320.1 hypothetical protein
chr06_pseudomolecule_IMGAG_V3 7989980-7989412 H
EGN_Mt090430 20090702
Length = 155
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 46 MKEEDWNLLDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSNMYEKPSAANKVHLMRR 105
M+ + W LD +A+ IRL L++NV N+ + L L +Y+ +N++ L +
Sbjct: 1 MEADKWEELDLRAVSAIRLCLAKNVLVNVQNLSSAKELWEKLKGLYQAKDISNRLLLKEQ 60
Query: 106 LFNLRMTESASVAQHLNELNTVTTQLSSVEIEFDEEVRALILLSSLPESWNATVTAVXXX 165
NLRM E S+E++ D+E +AL + SLP S+
Sbjct: 61 FHNLRMDE------------------ESIEVKIDDEDKALRFILSLPPSY--VHLKPVFM 100
Query: 166 XXXXXXXFDDVRDLVLSEEIRRRESGEPSTSSVLHT 201
F++V ++ EE R + S+ S+L T
Sbjct: 101 YGKESLSFEEVATKIIYEERRMKSDESTSSRSMLLT 136
>IMGA|Medtr4g114890.1 gag-pol polyprotein, related
chr04_pseudomolecule_IMGAG_V3 26420343-26419721 E
EGN_Mt090430 20090702
Length = 183
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 283 ICSLESKQES--WVLDSGASFHATSQKELLERYAPGNFGKVYLGNDQPCNIVGKGVVKIK 340
+ + +KQ S W++DSG + H T ++L + KV + N + G G V +K
Sbjct: 1 MSTFATKQPSKYWLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVK 60
Query: 341 LNGSTWELKDVRHIPDLRKNLISVGQLASDGYTTTF 376
+ ++ +V + P L ++L+SV QL + GY F
Sbjct: 61 SHSGYKQISNVLYAPKLNQSLLSVPQLLTKGYKVLF 96
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 1212 LYSDSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLENDVLKLEKIQGNKNPADMLTKAVT 1271
L D+ S I+LAKN H R+KHI +R+H++R + LKLE + AD+LTK V
Sbjct: 27 LKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVK 86
Query: 1272 ID 1273
I+
Sbjct: 87 IE 88
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236 H
EGN_Mt090430 20090702
Length = 89
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1215 DSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLENDVLKLEKIQGNKNPADMLTKAVTIDK 1274
D++S I+LAKN R+KHI R+HFIR + +++++E D TKA ID+
Sbjct: 17 DNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPTEVQLGDGFTKAFKIDR 76
Query: 1275 LKLCSTSVGLLE 1286
+GL+E
Sbjct: 77 FTCLRDKLGLIE 88
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 1215 DSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLENDVLKLEKIQGNKNPADMLTKAVTID 1273
D+ S I+LAKN H R+KHI +R+H++R + LKLE + AD+LTK V I+
Sbjct: 121 DNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVKIE 179