Jatropha Genome Database

JcCA0238091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0238091.10 + phase: 2 /partial
         (183 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g157300.1 XAP5 protein chr04_pseudomolecule_IMGAG_V3 ...   226   4e-60

>IMGA|Medtr4g157300.1 XAP5 protein chr04_pseudomolecule_IMGAG_V3
           39165192-39170843 E EGN_Mt090430 20090702
          Length = 424

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 122/162 (75%), Gaps = 3/162 (1%)

Query: 25  IKGNSRLSFADDMXXXXXXXX---XXXXXXXXXGLVRGKFGKDPTVETSFLPDSXXXXXX 81
           IKGNSRLSF++D+                    G+  GK GKDPTVETSFLPDS      
Sbjct: 200 IKGNSRLSFSEDIDNDAQEEEEPHQSNNIETNGGVRCGKLGKDPTVETSFLPDSEREAEE 259

Query: 82  XXXXXXXXKQWLHEQEQIRNEPLEITYSYWDGAGHRRVIQARKGDSIGEFLRAVQQQLAP 141
                   KQWL EQ+QIRNEPL+ITYSYWDG GHRRVIQ RKGD+IGEFLRA+QQQLAP
Sbjct: 260 QAERERLRKQWLREQDQIRNEPLQITYSYWDGTGHRRVIQVRKGDTIGEFLRAIQQQLAP 319

Query: 142 EFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP 183
           EFREIRTTSVENLLYVKEDLIIPHQHSFY+LIVNKARGKSGP
Sbjct: 320 EFREIRTTSVENLLYVKEDLIIPHQHSFYDLIVNKARGKSGP 361