Jatropha Genome Database

JcCA0236591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0236591.10 + phase: 2 /pseudo/partial
         (422 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g038110.1 Bacteriophytochrome; ; ; chr02_pseudomolecu...   357   7e-99
IMGA|Medtr2g056390.1 Bacteriophytochrome; ; ; chr02_pseudomolecu...   273   1e-73
IMGA|Medtr1g103490.1 ATP-binding region, ATPase-like; Phytochrom...   259   1e-69
IMGA|Medtr1g103220.1 ATP-binding region, ATPase-like; Phytochrom...   259   1e-69

>IMGA|Medtr2g038110.1 Bacteriophytochrome; ; ;
           chr02_pseudomolecule_IMGAG_V3 10630151-10619628 E
           EGN_Mt090430 20090702
          Length = 1152

 Score =  357 bits (916), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 164/187 (87%), Positives = 176/187 (94%), Gaps = 4/187 (2%)

Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
           GD+K+LCD VV+ VRELTGYDRVMVYKFHEDEHGEVVAE+KR DLEPYIGLHYPATDIPQ
Sbjct: 245 GDVKVLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYIGLHYPATDIPQ 304

Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
           ASRFLFKQ+RVRMIVDC+A+PVR+ QDEAL+QP+CLVGSTLRAPHGCHAQYMANMGSIAS
Sbjct: 305 ASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIAS 364

Query: 360 LAMAVIINGNDEEAIG----GRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQL 415
           LAMAVIINGNDE+ +G    GRN MRLWGLVVCHHTSAR IPFPLRYACEFLMQAFGLQL
Sbjct: 365 LAMAVIINGNDEDGVGIGGTGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQL 424

Query: 416 NMELQLA 422
           NMELQLA
Sbjct: 425 NMELQLA 431


>IMGA|Medtr2g056390.1 Bacteriophytochrome; ; ;
           chr02_pseudomolecule_IMGAG_V3 15440794-15444861 H
           EGN_Mt090430 20090702
          Length = 1122

 Score =  273 bits (699), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 148/182 (81%), Gaps = 8/182 (4%)

Query: 241 DIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQA 300
           DI LLCDTVV+ V++LTGY+RVM+YKFHED+HGEVV+E +RSDLE Y+GLHYP+ DIPQA
Sbjct: 218 DISLLCDTVVEEVQKLTGYERVMIYKFHEDDHGEVVSETRRSDLESYLGLHYPSIDIPQA 277

Query: 301 SRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASL 360
           +RFLFKQ+RVR+I DCHA PV++IQ   L +PLCLV STLR+PH CH QYMANMGSIASL
Sbjct: 278 ARFLFKQNRVRLIYDCHAKPVKVIQSRELKKPLCLVNSTLRSPHDCHKQYMANMGSIASL 337

Query: 361 AMAVIINGNDEEAIGGRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMELQ 420
            MAV+IN  D          RLWGL+VCHHTS   + FP+R+ACEF+M  FG+QL ME+Q
Sbjct: 338 VMAVVINEKD--------TTRLWGLLVCHHTSPHHVSFPVRHACEFVMHTFGMQLYMEIQ 389

Query: 421 LA 422
           LA
Sbjct: 390 LA 391


>IMGA|Medtr1g103490.1 ATP-binding region, ATPase-like; Phytochrome
           A/B/C/D/E; ; ; chr01_pseudomolecule_IMGAG_V3
           21563511-21568809 E EGN_Mt090430 20090702
          Length = 1205

 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 118/187 (63%), Positives = 146/187 (78%), Gaps = 5/187 (2%)

Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
           G ++ LCDT+V  V ELTGYDRVM YKFHED+HGEV+AE  ++ LEPY+GLHYPATDIPQ
Sbjct: 298 GSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVTKTGLEPYLGLHYPATDIPQ 357

Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
           A+RFLF +++VRMIVDCHA  V+++QDE L   L L GSTLRAPH CH QYMANM SIAS
Sbjct: 358 AARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIAS 417

Query: 360 LAMAVIINGNDEEAIGGRNLM-----RLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQ 414
           L MAV++N +DE+      ++     RLWGLVVCH+T+ R +PFPLRYACEFL Q F + 
Sbjct: 418 LVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIH 477

Query: 415 LNMELQL 421
           +N E++L
Sbjct: 478 VNKEIEL 484


>IMGA|Medtr1g103220.1 ATP-binding region, ATPase-like; Phytochrome
           A/B/C/D/E; ; ; chr01_pseudomolecule_IMGAG_V3
           21430870-21436242 E EGN_Mt090430 20090702
          Length = 1205

 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 118/187 (63%), Positives = 146/187 (78%), Gaps = 5/187 (2%)

Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
           G ++ LCDT+V  V ELTGYDRVM YKFHED+HGEV+AE  ++ LEPY+GLHYPATDIPQ
Sbjct: 298 GSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVTKTGLEPYLGLHYPATDIPQ 357

Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
           A+RFLF +++VRMIVDCHA  V+++QDE L   L L GSTLRAPH CH QYMANM SIAS
Sbjct: 358 AARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIAS 417

Query: 360 LAMAVIINGNDEEAIGGRNLM-----RLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQ 414
           L MAV++N +DE+      ++     RLWGLVVCH+T+ R +PFPLRYACEFL Q F + 
Sbjct: 418 LVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIH 477

Query: 415 LNMELQL 421
           +N E++L
Sbjct: 478 VNKEIEL 484