Jatropha Genome Database
- JcCA0234541.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0234541.10 - phase: 0 /TE/partial
(406 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 55 6e-08
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 53 3e-07
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 53 3e-07
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 51 1e-06
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 51 1e-06
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 50 3e-06
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 49 5e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 322 RYIARLIAKDYSQIRCIDFNYIFSHVVKHSSIXXXXXXXXXXXXXXXQLHVKTTFLHGEL 381
RY ARL+AK Y+QI +D+ +S V K +++ QL V FLHGEL
Sbjct: 798 RYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGEL 857
Query: 382 EDKIYIQQSEGFEIEGKEDHVCLLK 406
++ +Y+ G I K VC LK
Sbjct: 858 QEDVYMILPPGINI-AKPHQVCKLK 881
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 322 RYIARLIAKDYSQIRCIDFNYIFSHVVKHSSIXXXXXXXXXXXXXXXQLHVKTTFLHGEL 381
RY ARL+ K Y+Q ID+ FS VVK +++ QL V FLHG+L
Sbjct: 395 RYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDL 454
Query: 382 EDKIYIQQSEGFEIEGKEDHVCLL 405
+++Y+ G K D VC L
Sbjct: 455 HEEVYMDIPPGLATPHK-DLVCKL 477
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 322 RYIARLIAKDYSQIRCIDFNYIFSHVVKHSSIXXXXXXXXXXXXXXXQLHVKTTFLHGEL 381
RY ARL+AK Y+Q+ +D+ +S V KH++I QL V FLHG+L
Sbjct: 971 RYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDL 1030
Query: 382 EDKIYIQQSEG 392
++ +Y+ G
Sbjct: 1031 QEDVYMDIPPG 1041
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 322 RYIARLIAKDYSQIRCIDFNYIFSHVVKHSSIXXXXXXXXXXXXXXXQLHVKTTFLHGEL 381
RY ARL+AK Y+QI +D+ +S V K +++ QL V FLHG+L
Sbjct: 952 RYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDL 1011
Query: 382 EDKIYIQQSEGFEIEGKEDHVCLL 405
++ +Y+ G + K + VC L
Sbjct: 1012 QEDVYMMVPPGIK-SSKLNQVCKL 1034
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 322 RYIARLIAKDYSQIRCIDFNYIFSHVVKHSSIXXXXXXXXXXXXXXXQLHVKTTFLHGEL 381
RY ARL+AK Y+QI +D+ +S V K +++ QL V FLHG+L
Sbjct: 943 RYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGDL 1002
Query: 382 EDKIYIQQSEGFEIEGKEDHVCLL 405
++ +Y+ +G K + VC L
Sbjct: 1003 QEDVYMIVPQGI-TPSKSNQVCKL 1025
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 322 RYIARLIAKDYSQIRCIDFNYIFSHVVKHSSIXXXXXXXXXXXXXXXQLHVKTTFLHGEL 381
RY ARL+AK Y+Q+ +D+ FS V K +++ QL V FLHG+L
Sbjct: 926 RYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDL 985
Query: 382 EDKIYIQQSEGFEIEGKEDHVCLL 405
++ +Y+ G + + VC L
Sbjct: 986 QENVYMTLPPGISAK-HSNTVCKL 1008
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 322 RYIARLIAKDYSQIRCIDFNYIFSHVVKHSSIXXXXXXXXXXXXXXXQLHVKTTFLHGEL 381
RY ARL+AK Y+QI +D+ +S V K +++ Q V FLHGEL
Sbjct: 44 RYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGEL 103
Query: 382 EDKIYIQQSEGFEIEGKEDHVCLL 405
++ +Y+ G +D VC L
Sbjct: 104 QEDVYMIIPPGVP-HSHQDEVCKL 126