Jatropha Genome Database

JcCA0234331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0234331.10 + phase: 1 /pseudo/partial
         (154 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g013020.1 Zinc finger, RING-type chr04_pseudomolecule...   119   5e-28
IMGA|Medtr4g012940.1 Zinc finger, RING-type chr04_pseudomolecule...   119   5e-28
IMGA|Medtr3g025500.1 Zinc finger, RING-type chr03_pseudomolecule...   102   5e-23
IMGA|AC233659_30.1 Zinc finger, RING-type AC233659.1 131567-1298...   102   1e-22
IMGA|Medtr2g014770.1 Zinc finger, RING-type chr02_pseudomolecule...   102   1e-22
IMGA|AC233659_30.2 Zinc finger, RING-type AC233659.1 131567-1270...   101   1e-22
IMGA|Medtr3g102930.1 Zinc finger, RING-type chr03_pseudomolecule...    65   2e-11

>IMGA|Medtr4g013020.1 Zinc finger, RING-type
           chr04_pseudomolecule_IMGAG_V3 2447170-2443828 E
           EGN_Mt090430 20090702
          Length = 249

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 67/78 (85%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VIFPS++QLQ+GITD+E++KQ ++C  +YK KD + +GKLSEID+EREEEC ICME+ +K
Sbjct: 101 VIFPSLLQLQRGITDVEERKQKDLCATKYKPKDVIGKGKLSEIDLEREEECPICMEMNNK 160

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNC HSLC++C+ DW
Sbjct: 161 VVLPNCYHSLCMRCYNDW 178


>IMGA|Medtr4g012940.1 Zinc finger, RING-type
           chr04_pseudomolecule_IMGAG_V3 2408820-2405478 E
           EGN_Mt090430 20090702
          Length = 249

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 67/78 (85%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VIFPS++QLQ+GITD+E++KQ ++C  +YK KD + +GKLSEID+EREEEC ICME+ +K
Sbjct: 101 VIFPSLLQLQRGITDVEERKQKDLCATKYKPKDVIGKGKLSEIDLEREEECPICMEMNNK 160

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNC HSLC++C+ DW
Sbjct: 161 VVLPNCYHSLCMRCYNDW 178


>IMGA|Medtr3g025500.1 Zinc finger, RING-type
           chr03_pseudomolecule_IMGAG_V3 6609079-6606066 H
           EGN_Mt090430 20090702
          Length = 257

 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDI-EREEECGICMEIGS 59
           V+FPS++QL +GITD+ED+KQ  +C  +YK K+ +++GK SEID+ + EEEC ICMEI S
Sbjct: 108 VVFPSLLQLHRGITDVEDRKQKLLCATKYKPKELVDKGKSSEIDVEKEEEECDICMEITS 167

Query: 60  KAVLPNCNHSLCLKCFRDW 78
             VLPNCNHS+C+KC+RDW
Sbjct: 168 IVVLPNCNHSMCIKCYRDW 186


>IMGA|AC233659_30.1 Zinc finger, RING-type AC233659.1 131567-129857
           E EGN_Mt090430 20090702
          Length = 193

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 66/78 (84%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI+PS++QL+KG+TD EDKKQ  +C  RY+R+D+ +  + S+IDIER++ECGICME+ SK
Sbjct: 102 VIYPSLLQLEKGVTDSEDKKQKAVCMERYRRRDDDDCRQSSDIDIERDDECGICMEMNSK 161

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNCNH +CLKC+R+W
Sbjct: 162 IVLPNCNHVMCLKCYREW 179


>IMGA|Medtr2g014770.1 Zinc finger, RING-type
           chr02_pseudomolecule_IMGAG_V3 3884761-3879569 F
           EGN_Mt090430 20090702
          Length = 251

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 64/78 (82%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI+PS++QL+KG+TD EDKKQ  +C  RY+R+++ E  + S+ID EREEECGICME+ SK
Sbjct: 105 VIYPSLLQLEKGVTDAEDKKQKVVCMERYRRREDEEHKQFSDIDFEREEECGICMEMNSK 164

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNCNH +CLKC+ +W
Sbjct: 165 IVLPNCNHVMCLKCYHEW 182


>IMGA|AC233659_30.2 Zinc finger, RING-type AC233659.1 131567-127095
           E EGN_Mt090430 20090702
          Length = 248

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 66/78 (84%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI+PS++QL+KG+TD EDKKQ  +C  RY+R+D+ +  + S+IDIER++ECGICME+ SK
Sbjct: 102 VIYPSLLQLEKGVTDSEDKKQKAVCMERYRRRDDDDCRQSSDIDIERDDECGICMEMNSK 161

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNCNH +CLKC+R+W
Sbjct: 162 IVLPNCNHVMCLKCYREW 179


>IMGA|Medtr3g102930.1 Zinc finger, RING-type
           chr03_pseudomolecule_IMGAG_V3 25234708-25232596 F
           EGN_Mt090430 20090702
          Length = 259

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 35/41 (85%)

Query: 38  GKLSEIDIEREEECGICMEIGSKAVLPNCNHSLCLKCFRDW 78
           GKL+ +D++RE+ECGIC+E  +K VLPNC H++C+KC+R W
Sbjct: 150 GKLTNVDLQREDECGICLEPCTKMVLPNCCHAMCIKCYRKW 190