Jatropha Genome Database

JcCA0233921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0233921.10 - phase: 0 /pseudo/partial
         (412 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g079110.1 Zinc finger, CCHC-type; Putative 5-3 exonuc...   169   2e-42
IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3 exonuc...   105   3e-23
IMGA|Medtr1g096550.1 Zinc finger, CCHC-type; Putative 5-3 exonuc...    84   1e-16

>IMGA|Medtr4g079110.1 Zinc finger, CCHC-type; Putative 5-3
           exonuclease chr04_pseudomolecule_IMGAG_V3
           15747564-15753520 E EGN_Mt090430 20090702
          Length = 809

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGYIS C G+  PP FRSPV GMEDI+DN VICA+YRLPD H+HI RP  GV FPKK V
Sbjct: 580 MNGYISFCDGEPCPPFFRSPVAGMEDIIDNHVICAIYRLPDAHEHINRPLHGVKFPKKTV 639

Query: 105 NSGDLKPDPVLWHEDSGRRPWESQRHNPPGTISGRQLG-EVSHRLVMNSLQLKVDHNGYA 163
              DLKP+PVLWHEDSGRR  ESQR  P GT S RQL  E +HRLV+NSLQ+K+D N Y 
Sbjct: 640 AIEDLKPEPVLWHEDSGRRYGESQRKKPSGTYSCRQLNEEAAHRLVVNSLQVKMDANRYH 699

Query: 164 NHLHIQTSPYAA 175
           + ++    PYAA
Sbjct: 700 HPMNGPRMPYAA 711


>IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3
           exonuclease chr07_pseudomolecule_IMGAG_V3
           33823109-33833019 E EGN_Mt090430 20090702
          Length = 956

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 71/111 (63%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNG++     +    +  SP+ G++DI  N+V+   Y  P  H+HI +PP GV+ P+K++
Sbjct: 656 MNGFLWSYERNVFRTVVSSPIKGLQDIACNQVLNITYLNPRTHRHIPKPPDGVVMPQKIL 715

Query: 105 NSGDLKPDPVLWHEDSGRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQL 155
            + D+KP PVLWHED+ RR    +R   PG I+G QLGE +HRLV NSLQ 
Sbjct: 716 RALDIKPLPVLWHEDNSRRHQARERQQVPGAIAGPQLGEAAHRLVRNSLQF 766


>IMGA|Medtr1g096550.1 Zinc finger, CCHC-type; Putative 5-3
           exonuclease chr01_pseudomolecule_IMGAG_V3
           19776783-19768494 E EGN_Mt090430 20090702
          Length = 883

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGY+  C  +    I  SP+ G+ DI  N+V+   Y  P  H HI +PP GV+ PKK++
Sbjct: 577 MNGYLWACERNVLSSIAPSPIDGLPDIESNQVLNITYLNPCRHGHIPKPPDGVVIPKKII 636

Query: 105 NSGDLKPDPVLWHEDS-GRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLK 156
              D+KP PVLWHED+ GR     +R   PG I+G QLGE +HRLV N+L +K
Sbjct: 637 KDIDIKPSPVLWHEDNVGRGQQGRERSQVPGAITGSQLGEAAHRLVKNTLNIK 689