Jatropha Genome Database
- JcCA0231431.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0231431.10 - phase: 0 /TE/partial
(858 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 483 e-136
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 462 e-130
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 454 e-128
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 446 e-125
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 314 1e-85
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 285 8e-77
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 252 5e-67
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 248 8e-66
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 228 1e-59
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 196 5e-50
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 171 1e-42
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 143 3e-34
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 142 5e-34
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 139 6e-33
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 121 2e-27
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 108 8e-24
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 95 2e-19
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 87 3e-17
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 84 4e-16
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 82 9e-16
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 79 1e-14
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 77 3e-14
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 77 5e-14
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 69 1e-11
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 67 4e-11
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 63 5e-10
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 61 2e-09
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 60 3e-09
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 60 4e-09
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 59 7e-09
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 57 3e-08
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 57 5e-08
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 56 9e-08
IMGA|Medtr5g043900.1 hypothetical protein chr05_pseudomolecule_I... 55 1e-07
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 55 2e-07
IMGA|Medtr8g081950.1 lectin receptor kinase, related chr08_pseud... 54 3e-07
IMGA|Medtr4g104330.1 hypothetical protein chr04_pseudomolecule_I... 52 1e-06
IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger, C... 52 2e-06
IMGA|Medtr3g148550.1 Cyclin-like F-box; F-box protein interactio... 51 3e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 483 bits (1242), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/519 (47%), Positives = 333/519 (64%), Gaps = 12/519 (2%)
Query: 307 EPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLD 366
EP T +A H W AM+ E+ AL K TW +V + IG +W++K KH +DG+++
Sbjct: 738 EPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIE 797
Query: 367 RLKARLVAKGFHQVDGQDFTETFSPVIKPGTIRLVLSIALVLKWQIRQLDVKNAFLHGHI 426
R KARLVAKG+ Q++G D+ ET+SPV K T+RLV+++A + W + QLDV NAFLHG +
Sbjct: 798 RYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGEL 857
Query: 427 TEDLYMAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSL 486
ED+YM P G I+ P+ VCKLK++LYGLKQA R W+++L+ L+ ++ + +D SL
Sbjct: 858 QEDVYMILPPG-INIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSL 916
Query: 487 FIFQSSKGMIALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTS 546
FI +SS LL+YVDD++L G+S + +L F +KDLGQL +FLGIEV H+
Sbjct: 917 FIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAHSK 976
Query: 547 DGLLLNQFHYALTLLDRFGMIDSKPMSTPSELQPPVTK-----AAASVDATLYRSIVGAL 601
G+ L Q Y L LL G I SKP+STPS+ P TK + D YR +VG L
Sbjct: 977 LGISLYQRKYCLDLLHDSGHIGSKPISTPSD---PSTKLHHDTSTPYDDIPAYRRLVGRL 1033
Query: 602 QYLTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNSTLTLQGF 661
YL TRPDI F +SQF+ +PT+ H R LRY+K GL F NS+LTLQGF
Sbjct: 1034 LYLNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGF 1093
Query: 662 ADADWAGCPITRRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELTWLT 721
+DADWAGC TR+S TG C FLG++LISW KKQ TVSRSS+EAEYRA+A T E+ WL
Sbjct: 1094 SDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLL 1153
Query: 722 YLLKEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYI 781
YLL + I + PP+L+CDN SAL++ NPVFH R+KH+E+D H VRE++ G+L +
Sbjct: 1154 YLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPV 1213
Query: 782 PTTQQVADIFTKPIHKSALANFRSKLRL---KPRPSLRG 817
+ Q+AD FTK + + SKL L RP+ G
Sbjct: 1214 SSQDQIADFFTKALLPKTFSLLLSKLGLIDIYQRPTCGG 1252
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/493 (47%), Positives = 316/493 (64%), Gaps = 3/493 (0%)
Query: 306 KEPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTL 365
EP+T +A H W+ AM+ E+ AL + TW V N+ IG +WVFK K +DG++
Sbjct: 865 NEPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSI 924
Query: 366 DRLKARLVAKGFHQVDGQDFTETFSPVIKPGTIRLVLSIALVLKWQIRQLDVKNAFLHGH 425
+R KARLVAKG+ QV+G D+ +TFSPV K T+RL++++A + W + QLDV NAFLHG
Sbjct: 925 ERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGD 984
Query: 426 ITEDLYMAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPS 485
+ E++YM P G I ++ N VCKL ++LYGLKQA R W+D+L+ L+ + + + +D S
Sbjct: 985 LQENVYMTLPPG-ISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDHS 1043
Query: 486 LFIFQSSKGMIALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHT 545
LF ++ LL+YVDD++L G S +L F +KDLGQL FLG+EV H+
Sbjct: 1044 LFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGLEVAHS 1103
Query: 546 SDGLLLNQFHYALTLLDRFGMIDSKPMSTPSELQPPVTKAAA--SVDATLYRSIVGALQY 603
G+ L Q Y L LL G I SKP STPS+ + K A D YR ++G L Y
Sbjct: 1104 QLGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLIGRLLY 1163
Query: 604 LTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNSTLTLQGFAD 663
L TRPDI + +SQF+ PT H R+LRY+K GL F NS L LQG++D
Sbjct: 1164 LNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYSD 1223
Query: 664 ADWAGCPITRRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELTWLTYL 723
ADWAGC TRRS +G C FLG++LISW KKQ TVSRSS+EAEYRA+A T EL WL YL
Sbjct: 1224 ADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQWLIYL 1283
Query: 724 LKEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYIPT 783
L++ + T P+LFCDN SAL++ NPVFH R+KH+E+D H VRE++ G+L + +
Sbjct: 1284 LQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKLLPVSS 1343
Query: 784 TQQVADIFTKPIH 796
+QVAD FTK +H
Sbjct: 1344 KEQVADFFTKSLH 1356
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/505 (45%), Positives = 323/505 (63%), Gaps = 3/505 (0%)
Query: 307 EPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLD 366
EP++ +A WKHAM+ E+ AL K TW LV N+ IG +W++K K +DGT++
Sbjct: 892 EPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADGTVE 951
Query: 367 RLKARLVAKGFHQVDGQDFTETFSPVIKPGTIRLVLSIALVLKWQIRQLDVKNAFLHGHI 426
R KARLVAKG++Q++G D+ +T+SPV K T+RLV++++ + W + QLDV NAFLHG +
Sbjct: 952 RYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDL 1011
Query: 427 TEDLYMAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSL 486
ED+YM P G+ S+ N VCKL ++LYGLKQA R W+++L+ L + + +D SL
Sbjct: 1012 QEDVYMMVPPGIKSSKL-NQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDYSL 1070
Query: 487 FIFQSSKGMIALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTS 546
F+ ++S LL+YVDD++L G+S +L F +KDLGQL +FLGIEV H+
Sbjct: 1071 FVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEVAHSK 1130
Query: 547 DGLLLNQFHYALTLLDRFGMIDSKPMSTPSE--LQPPVTKAAASVDATLYRSIVGALQYL 604
G+ L Q Y L LL G + SKP+STPS+ ++ + ++ D R +VG L YL
Sbjct: 1131 LGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRRLVGRLLYL 1190
Query: 605 TLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNSTLTLQGFADA 664
TRPDI F +SQF+ PT H R+L+Y+K GL F +S+L LQGF+DA
Sbjct: 1191 NNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSDA 1250
Query: 665 DWAGCPITRRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELTWLTYLL 724
DWAGC TRRS +G C FLG++LISW KKQ TVS+SS+EAEYRA+A T EL W+ YLL
Sbjct: 1251 DWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILYLL 1310
Query: 725 KEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYIPTT 784
K+ P+L+CDN SA+++ NPVFH R+KH+E+D H +R+++ G+L + +
Sbjct: 1311 KDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVSSQ 1370
Query: 785 QQVADIFTKPIHKSALANFRSKLRL 809
QVAD FTK + SKL L
Sbjct: 1371 DQVADFFTKALLPKPFNILLSKLGL 1395
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/494 (46%), Positives = 317/494 (64%), Gaps = 9/494 (1%)
Query: 307 EPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLD 366
EP T +A WK AM+ E++AL TW LV N+ I +W++K KH +DG+++
Sbjct: 883 EPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHADGSIE 942
Query: 367 RLKARLVAKGFHQVDGQDFTETFSPVIKPGTIRLVLSIALVLKWQIRQLDVKNAFLHGHI 426
R KARLVAKG++Q++G D+ +T+SPV K T+R ++++A + W I QLDV NAFLHG +
Sbjct: 943 RYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGDL 1002
Query: 427 TEDLYMAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSL 486
ED+YM P G+ S+ N VCKL ++LYGLKQA R W+++L+ LV + ++ S +D SL
Sbjct: 1003 QEDVYMIVPQGITPSK-SNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSDHSL 1061
Query: 487 FIFQSSKGMIALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTS 546
FI ++ ALL+YVDD+++TG+S +L +KDLGQL +FLG+EV H+S
Sbjct: 1062 FIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVAHSS 1121
Query: 547 DGLLLNQFHYALTLLDRFGMIDSKPMSTPSELQPPVTKAAAS-----VDATLYRSIVGAL 601
G+ L Q Y L LL G + +KP STPS+ P K A D YR ++G L
Sbjct: 1122 QGISLCQRKYCLDLLTDIGFLAAKPASTPSD---PSCKLHADGGPPFSDIPSYRRLIGRL 1178
Query: 602 QYLTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNSTLTLQGF 661
YLT TRP I F+ +SQF++ PT H RILRY+K + GL F +S+L L G+
Sbjct: 1179 IYLTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGY 1238
Query: 662 ADADWAGCPITRRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELTWLT 721
+DADWAGC +RRS +G C FLG +LISW KKQ TVSRSS+EAEYRA+ T EL WL
Sbjct: 1239 SDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLL 1298
Query: 722 YLLKEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYI 781
YLL + + +L+CDN SAL++ NPVFH R+KH+E+D H VRE++ ++ +
Sbjct: 1299 YLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPV 1358
Query: 782 PTTQQVADIFTKPI 795
+ Q+AD FTKP+
Sbjct: 1359 TSADQLADFFTKPL 1372
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 314 bits (804), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 194/497 (39%), Positives = 257/497 (51%), Gaps = 107/497 (21%)
Query: 307 EPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLD 366
EP+T +A W+ AM+ E+ AL TW ++ N IG +W++K KH +D T++
Sbjct: 291 EPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIE 350
Query: 367 RLKARLVAKGFHQVDGQDFTETFSPVIKPGTIRLVLSIALVLKWQIRQLDVKNAFLHGHI 426
R KARLVAKG++QV+G D+ +T+SPV K TIRL KW
Sbjct: 351 RYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLA-----SRKW---------------- 389
Query: 427 TEDLYMAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSL 486
Y S +++ +G KQA AD SL
Sbjct: 390 ----YEKLASLLVN--------------HGYKQAS--------------------ADHSL 411
Query: 487 FIFQSSKGMIALLIYVDDMLLTGSSAVLLDGFV---QLLCKEFAMKDLGQLHHFLGIEVT 543
FI S+ ALL+YVDD++L G+S LD F +L F +KDLGQL +FLG+EV
Sbjct: 412 FIKHSTTQFTALLVYVDDIILAGNS---LDEFTFIKNILHNSFKIKDLGQLKYFLGLEVA 468
Query: 544 HTSDGLLLNQFHYALTLLDRFGMIDSKPMSTPSELQPPVTK-----AAASVDATLYRSIV 598
H+ G+ L Q Y L LL G++DSKP++TPS+ P K + D YR +V
Sbjct: 469 HSKLGISLCQRKYGLDLLSDTGLLDSKPVATPSD---PSIKLYHDDSPLYTDIPAYRRLV 525
Query: 599 GALQYLTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNSTLTL 658
G L YL TRPDI F +SQF+ PT H R+LRY+K GLHF +S +
Sbjct: 526 GRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLPYI 585
Query: 659 QGFADADWAGCPITRRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELT 718
QG++DADWAGC TRRS +G C FLG +LISW KKQ TVSRSS+EAEYRA+ T+
Sbjct: 586 QGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRALGAATS--- 642
Query: 719 WLTYLLKEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVT 778
NPVFH R+KH+E+D H VRE++A G++
Sbjct: 643 -------------------------------NPVFHERTKHLEIDCHIVREKLAAGIMKL 671
Query: 779 KYIPTTQQVADIFTKPI 795
I + Q+AD FTK I
Sbjct: 672 LPISSKNQLADCFTKSI 688
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 285 bits (728), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 207/337 (61%), Gaps = 3/337 (0%)
Query: 307 EPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLD 366
EP + +A P W+ AM +E ALH N TWTL + +G +WV+K KHK+DG+++
Sbjct: 335 EPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVE 394
Query: 367 RLKARLVAKGFHQVDGQDFTETFSPVIKPGTIRLVLSIALVLKWQIRQLDVKNAFLHGHI 426
R KARLV KG+ Q G D+TETFSPV+K T+R ++ A +W I QLDV NAFLHG +
Sbjct: 395 RYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDL 454
Query: 427 TEDLYMAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSL 486
E++YM P G+ + + VCKL ++LYGLKQA R W+++L+ L + G+ S D SL
Sbjct: 455 HEEVYMDIPPGLA-TPHKDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSL 513
Query: 487 FIFQSSKGMIALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTS 546
F + + L +YVDD+LLTG+ +D + L +F +KDLG+LH+FLG+EV +
Sbjct: 514 FYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKD 573
Query: 547 DGLLLNQFHYALTLLDRFGMIDSKPMSTPSELQPPVTKAAASV--DATLYRSIVGALQYL 604
DG+L++Q + L LL F P+S+P + + V D T YR ++G L +L
Sbjct: 574 DGILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRKLIGKLNFL 633
Query: 605 TLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVK 641
T TR D+A+ V +SQ+M DP H+ +LRY+K
Sbjct: 634 THTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLK 670
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 183/314 (58%), Gaps = 16/314 (5%)
Query: 496 IALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSDGLLLNQFH 555
+A+LIYVDD+++ G+ + F Q L + F MKDLG L +FLG+E+ ++GL + Q
Sbjct: 1 MAVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRK 60
Query: 556 YALTLLDRFGMIDSKPMSTPSELQPPVT--KAAASVDATLYRSIVGALQYLTLTRPDIAF 613
Y L +LD M+D KP + P E + K D + YR ++ L YLT+ P+I +
Sbjct: 61 YTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITY 120
Query: 614 SVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNSTLTLQGFADADWAGCPITR 673
SV+ ++ R+LRY+K + G+ + L L + D+DWA CP+TR
Sbjct: 121 SVHILTM--------------RVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTR 166
Query: 674 RSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELTWLTYLLKEFSIPITV 733
RST+GY LGS ISW KKQ TVS+SS+EAEYRAM +E+ WL LL +
Sbjct: 167 RSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDS 226
Query: 734 PPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYIPTTQQVADIFTK 793
P +L CDN +A++L NPV+H R+KHIE+D HF+R + +G + T Y+PT +Q ADIFTK
Sbjct: 227 PTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTK 286
Query: 794 PIHKSALANFRSKL 807
+ KL
Sbjct: 287 ALGAKQFQELTFKL 300
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 248 bits (633), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 184/292 (63%), Gaps = 3/292 (1%)
Query: 324 MEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLDRLKARLVAKGFHQVDGQ 383
M+ EI AL + TW +V + IG +W+FK KH DG+++R KARLVAKG++Q++G
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 384 DFTETFSPVIKPGTIRLVLSIALVLKWQIRQLDVKNAFLHGHITEDLYMAQPSGMIDSQF 443
D+ +T+SPV K T+R ++++A + W + Q DV NAFLHG + ED+YM P G+ S
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHSH- 119
Query: 444 PNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSLFIFQSSKGMIALLIYVD 503
+ VCKL ++LYGL+QA W+++L+ L+S G+ + +D SLFI + LL+YVD
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 504 DMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSDGLLLNQFHYALTLLDR 563
D++L G + + +L F +KD+GQL +FLG+EV H+ G+ L Q Y L LL+
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLED 239
Query: 564 FGMIDSKPMSTPSE--LQPPVTKAAASVDATLYRSIVGALQYLTLTRPDIAF 613
G+ SKPM+TPS+ ++ A + D YR ++G L YL TRPDI +
Sbjct: 240 SGLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDITY 291
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 158/258 (61%), Gaps = 2/258 (0%)
Query: 486 LFIFQSSKGMIALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHT 545
+F + LL+YVDD++L G+S +L F +KDLGQL + LG+EV H+
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 546 SDGLLLNQFHYALTLLDRFGMIDSKPMSTPSELQPPVTKAAAS--VDATLYRSIVGALQY 603
G+ L Q Y L LL G I+SKP+ST S+ + ++ D YR ++G L Y
Sbjct: 61 KQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLY 120
Query: 604 LTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNSTLTLQGFAD 663
L TRPDI F +SQF+ PT H R+L+Y+K GL F NS+L LQGF+D
Sbjct: 121 LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSD 180
Query: 664 ADWAGCPITRRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELTWLTYL 723
DWAGC +RRS +G C F+G++LISW KKQ TVSRSS+EAEYRA+A T EL W+ YL
Sbjct: 181 VDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWILYL 240
Query: 724 LKEFSIPITVPPILFCDN 741
LK+ +I + P+LFCDN
Sbjct: 241 LKDLNIQSSKLPVLFCDN 258
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 207/498 (41%), Gaps = 149/498 (29%)
Query: 291 NPRYALLTTVDSSIPKEPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIG 350
+P Y T SS EP + +QA + P W+ AM E++AL T
Sbjct: 137 SPSYCSFTLAISS-DIEPSSFKQAQSDPRWQLAMSPELSALEATGT-------------- 181
Query: 351 SKWVFKTKHKSDGTLDRLKARLVAKGFHQVDGQDFTETFSPVIKPGTIRLVLSIALVLKW 410
W+F V P I + S KW
Sbjct: 182 --WIF------------------------------------VDPPPNISPIGS-----KW 198
Query: 411 QIRQLDVKNAFLHGHITEDLYMAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDRLSR 470
R D N FLHG + ED+YM P G + P VCKL ++LYGLKQA R WF++L
Sbjct: 199 IFRLNDANNTFLHGDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRRWFEKLIS 257
Query: 471 FLVSYGFVCSLADPSLFIFQSSKGMIALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKD 530
L++ GFV + AD S I S ALLIYV
Sbjct: 258 LLLTIGFVQASADHSFLIRASPTSFTALLIYV---------------------------- 289
Query: 531 LGQLHHFLGIEVTHTSDGLLLNQFHYALTLLDRFGMIDSKPMSTPSELQ--------PPV 582
H+S G+ L Q Y L LL G+ K +STP + PP
Sbjct: 290 ------------AHSSKGISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPF 337
Query: 583 TKAAASVDATLYRSIVGALQYLTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKG 642
D YR ++G L YLT TRPDI+F+ +SQFM P+V H + +LRY++
Sbjct: 338 D------DVLAYRCLIGCLLYLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQV 391
Query: 643 TLDHGLHFTSNSTLTLQGFADADWAGCPITRRSTT------GYCTFLGSNLISWCAKKQH 696
GL F S + L GF+DADW GC +RRS + FL S + +
Sbjct: 392 CPGRGLFFPRTSEMQLLGFSDADWGGCVDSRRSLAFQEAIHRFLFFLRSGISCF------ 445
Query: 697 TVSRSSTEAEYRAMAHTTAELTWLTYLLKEFSIPITVPPILFCDNLSALYLTINPVFHAR 756
++S T MAH IL+CDN SAL++ NPVF+ R
Sbjct: 446 SISHPRTP-----MAHIRLS-------------------ILYCDNQSALHIAANPVFYER 481
Query: 757 SKHIELDYHFVRERVAQG 774
+KH+++D H VRE+V +G
Sbjct: 482 TKHLDIDCHIVREKVQRG 499
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 168/337 (49%), Gaps = 46/337 (13%)
Query: 443 FPNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSLFIFQSSKGMIALLIYV 502
+ V KL +ALYGLKQAPRAW R+ +F V GF LA+ +++ + S+G L+I
Sbjct: 261 YTEVVFKLNKALYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYV-KGSEGTSLLII-- 317
Query: 503 DDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSDGLLLNQFHYALTLLD 562
C +E+ T+ GL+LNQ Y +
Sbjct: 318 --------------------C----------------LEILRTTKGLILNQTKYDTEIQK 341
Query: 563 RFGMID---SKPMSTPSELQPPVTKAAASVDATLYRSIVGALQYLTLTRPDIAFSVNFVS 619
+F M+D S ++ + + V + VD T+ R ++G L+YL +R DI++SV VS
Sbjct: 342 KFNMLDFNSSITLAYANNINE-VKEEDKGVDPTILRRLIGLLRYLCQSRLDISYSVGIVS 400
Query: 620 QFMHDPTVIHMKFVHRILRYVKGTLDHGLHF---TSNSTLTLQGFADADWAGCPITRRST 676
+FM +P H +I+RY+ GTL +G+ F L++ ++DADW RR T
Sbjct: 401 KFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRT 460
Query: 677 TGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELTWLTYLLKEFSIPITVPPI 736
T + L ISW +KKQ V+ SS E EY + + WL +L++ I + P
Sbjct: 461 TSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQPIK 520
Query: 737 LFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQ 773
L DN A+ L N + H +SKHIE +H++R++V +
Sbjct: 521 LLIDNKYAINLAKNHISHGKSKHIETKFHYLRDQVNK 557
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 100/174 (57%), Gaps = 17/174 (9%)
Query: 635 RILRYVKGTLDHGLHFTSNSTLTLQGFADADWA-GCPITRRSTTGYCTFLGSNLISWCAK 693
R+L Y+KG GL F S+L +QG+ +ADWA GC TRRS + C F W
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCFF------CW--- 52
Query: 694 KQHTVSRSSTEAEYRAMAHTTAELTWLTYLLKEFSIPITVPPILFCDNLSALYLTINPVF 753
SS+EAEYRA+A T EL LTYLL++ + PP+L+CDN SA+Y+ NPVF
Sbjct: 53 -------SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVF 105
Query: 754 HARSKHIELDYHFVRERVAQGLLVTKYIPTTQQVADIFTKPIHKSALANFRSKL 807
H +KH+E+D H VRE++ GL I + QVAD FTK + SKL
Sbjct: 106 HECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKL 159
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
Query: 307 EPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLD 366
EP++ +A W+ AM+ E+ AL TW ++ +N IG +W++K KH +DGT++
Sbjct: 911 EPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIE 970
Query: 367 RLKARLVAKGFHQVDGQDFTETFSPVIKPGTIRLVLSIALVLKWQIRQLDVKNAFLHGHI 426
R KARLVAKG++QV+G D+ +T+SPV K TIRLVL++A + W + QLDV NAFLHG +
Sbjct: 971 RYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDL 1030
Query: 427 TEDLYMAQPSGMIDSQFPN 445
ED+YM P G + + PN
Sbjct: 1031 QEDVYMDIPPG-VSTNKPN 1048
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 147/323 (45%), Gaps = 72/323 (22%)
Query: 498 LLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSDG-LLLNQFHY 556
+++YV DM++TG++ LL V L F++KDLG L +FLGIEV S+G LL+ Q Y
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKY 60
Query: 557 ALTLLDRFGMIDSKPMSTP--SELQPPVTKAAASVDATLYRSIVGALQYLTLTRPDIAFS 614
LL + M ++K + +P S+L+ + D TL RSIV ALQY L P
Sbjct: 61 VRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP----- 115
Query: 615 VNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNST--LTLQGFADADWAGCPIT 672
+ +LR++KGTL GL T L++ + DADW P
Sbjct: 116 ------------------LSNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADWGSDPDD 157
Query: 673 RRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAELTWLTYLLKEFSIPIT 732
R + C FLG NLISW AKKQ ++RSSTEAEY ++A +EL W
Sbjct: 158 R--SVDACVFLGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLW------------- 202
Query: 733 VPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYIPTTQQVADIFT 792
+ + R +V Q L +P +V DI T
Sbjct: 203 -----------------------------IKTYGARLKVIQKKLFVSNVPGQVKVVDIMT 233
Query: 793 KPIHKSALANFRSKLRLKPRPSL 815
K + + R+KL + P++
Sbjct: 234 KALPPTRFEGLRTKLTVCCSPTV 256
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 80/114 (70%)
Query: 697 TVSRSSTEAEYRAMAHTTAELTWLTYLLKEFSIPITVPPILFCDNLSALYLTINPVFHAR 756
TVS+SS+EAEYRAMA T E+ WLTYLL++F++ P +L+CD+ SA ++ N FH R
Sbjct: 248 TVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHER 307
Query: 757 SKHIELDYHFVRERVAQGLLVTKYIPTTQQVADIFTKPIHKSALANFRSKLRLK 810
+KHIELD H VRE++ Q L + ++QQ+AD+ TKP+ +NF SKL LK
Sbjct: 308 TKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLGLK 361
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 29/150 (19%)
Query: 324 MEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLDRLKARLVAKGFHQVDGQ 383
M+ EI AL TW LV N+ IG +W++K KH +DG++ R KARLV KG++QV+G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 384 DFTETFSPVIKPGTIRL----------------------------VLSIALVLKWQIRQL 415
D+ +T+SPV K T RL V+++A + +W I +L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 416 DVKNAFLHGHITEDLYMAQPSGMIDSQFPN 445
D +AFLHG + ED+YM P G+ S+ PN
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGITTSK-PN 149
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 69/105 (65%)
Query: 447 VCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSLFIFQSSKGMIALLIYVDDML 506
V L+++LYGLKQA R W+ +LS+ L+ YGF S AD SLF + +A+LIYVDD++
Sbjct: 2 VYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLV 61
Query: 507 LTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSDGLLL 551
+ G+ + F Q L + F MKDLG L +FLG+E+ ++GL +
Sbjct: 62 IAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFM 106
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 432 MAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDRLSRFLVSYGFVCSLADPSLFIFQS 491
M+QP G + Q PN VCKL+++LYGLKQAP+AWF L +FL+ Y F + +D SLFI+
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 492 SKGMIALLIYVDDMLLT 508
+ L+YVDD+ LT
Sbjct: 61 ANTFAYFLVYVDDIPLT 77
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 540 IEVTHTSDGLLLNQFHYALTLLDRFGMIDSKPMSTPSELQP--PVTKAAASVDATLYRSI 597
+E+ S GL+L+Q YA +L +F M+D T ++ V + VD T++R +
Sbjct: 1 MEILINSKGLILHQTDYASEILKKFNMLDCNSTITHADANIIYEVKEEDEGVDPTMFRRL 60
Query: 598 VGALQYLTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHF---TSNS 654
+G+L+YL +RP I++ V VS+FM +P + +ILRY+ TL +G+ F +
Sbjct: 61 IGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATE 120
Query: 655 TLTLQGFADAD 665
L ++G++DAD
Sbjct: 121 QLDMEGYSDAD 131
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 82.4 bits (202), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/43 (83%), Positives = 38/43 (88%)
Query: 666 WAGCPITRRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYR 708
WAGCP+TRRSTT YC FLGSN ISW +KKQ TVSRSSTEAEYR
Sbjct: 8 WAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSSTEAEYR 50
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 505 MLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSDGLLLNQFHYALTLLDRF 564
M+++G ++ ++ Q LC F MKDL L +FLG+E ++D L L+Q YA L+ +
Sbjct: 1 MIISGDDSIGIEELKQFLCHHFEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQA 60
Query: 565 GMIDSKPMSTPSELQPPVTKAAASV--DATLYRSIVGALQYLTLTRPDIAFSVNFVS 619
G+ D K T E T ++ DATLY VG+L YLT TRP+I++ V+ VS
Sbjct: 61 GLTDCKIEYTRLEPNIQFTPQDGTLLDDATLYWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 306 KEPRTVRQALAHPGWKHAMEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTL 365
EP+T +A W+ AM+ E+ AL TW ++ N IG +W++K KH +DGT+
Sbjct: 383 NEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTI 442
Query: 366 DRLKARLVAKGFHQV--DGQDFTE 387
+R KARLVAKG++Q+ GQ F +
Sbjct: 443 ERYKARLVAKGYNQLAFKGQLFYQ 466
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 47/64 (73%)
Query: 708 RAMAHTTAELTWLTYLLKEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFV 767
+A+A T+E W+ Y L +F IP + P I++CDN S++++ NPVFH R+KHIE+D H V
Sbjct: 2 QALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVV 61
Query: 768 RERV 771
R+++
Sbjct: 62 RDKI 65
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 588 SVDATLYRSIVGALQYLTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHG 647
+VD T +R ++G L+YL TRPD+A S+ +SQFM + V HM V R+L Y+KG ++H
Sbjct: 25 NVDFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQNLGVSHMIAVKRMLIYIKGKVEHA 84
Query: 648 LHFTSN 653
+ F++N
Sbjct: 85 ILFSNN 90
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 726 EFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYIPTTQ 785
E I V L DN SA+ L N +FH + KH+E +HF+R++V + L+ +Y PT
Sbjct: 3 ELKIGDEVAVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQD 62
Query: 786 QVADIFTKPIHKSALANFRSKLRL 809
Q+ D+FTK + + R ++R+
Sbjct: 63 QLTDLFTKALKRDQFLKLRREIRV 86
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236
H EGN_Mt090430 20090702
Length = 89
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 45/86 (52%)
Query: 724 LKEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYIPT 783
+KE + P L DN S + L NP+ RSKHI+ +HF+RE+V + ++ +Y PT
Sbjct: 1 MKELHCEVKKPLKLKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPT 60
Query: 784 TQQVADIFTKPIHKSALANFRSKLRL 809
Q+ D FTK R KL L
Sbjct: 61 EVQLGDGFTKAFKIDRFTCLRDKLGL 86
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 589 VDATLYRSIVGALQYLTLTRPDIAFSVNFVSQFMHDPTVIHMKFVHRILRYVKGTLDHGL 648
++AT+YR I+G L+Y+ RP IA V V KG D
Sbjct: 35 MNATIYRQIIGPLRYMCNKRPYIAHGVGLV----------------------KGDQDD-- 70
Query: 649 HFTSNSTLTLQGFADADWAGCPITRRSTTGYCTFLGSNLISWCAKKQHTVSRSSTEAEYR 708
++STT Y +G+ ISW +KKQ V+ SS+EA+Y
Sbjct: 71 ------------------------KKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYV 106
Query: 709 AMAHTTAELTWLTYLLKEFSIPITVPPILFCDNLSALYLTINPVFHAR 756
A ++ + W+ LL+E + L DN A+ L P+ H +
Sbjct: 107 ATSYAACQALWIEMLLEELNAFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 740 DNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYIPTTQQVADIFTKPIHKSA 799
DN+S + L NP+ H RSKHIE+ +H++RE+V++G L ++ + Q+AD+ TK +
Sbjct: 30 DNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVKIEV 89
Query: 800 LANFRSKLRLK 810
R + ++
Sbjct: 90 FTKPRDSMEIE 100
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 740 DNLSALYLTINPVFHARSKHIELDYHFVRERVAQGLLVTKYIPTTQQVADIFTKPIHKSA 799
DN+S + L NP+ H RSKHIE+ +H++RE+V++G L ++ + Q+AD+ TK +
Sbjct: 121 DNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVKIEV 180
Query: 800 LANFRSKLRLK 810
R + ++
Sbjct: 181 FTKPRDSMEIE 191
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 495 MIALLIYVDDMLLTGSSAVL--LDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSDGLLLN 552
M ++Y+ + T ++ L + F + + ++F M DLG + +FLGIE S LL++
Sbjct: 1 MFLNMLYMSKRITTKAAVKLAHISEFRKDMMRQFEMTDLGHISYFLGIEFHRRSRDLLMH 60
Query: 553 QFHYALTLLDRFGMIDSKPMSTPSE--LQPPVTKAAASVDATLYRSIVGALQYLTLT 607
Q YA+ +L +F + TP++ Q + VD T Y ++G+ ++ +T
Sbjct: 61 QRRYAIKILKKFDIEYRNHAVTPAKTIFQLSKNNDESDVDPTQYGRLIGSQVFIAVT 117
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 324 MEEEIAALHKNETWTLVPRHTNMNVIGSKWVFKTKHKSDGTLDRLKARLVAKGFHQVDGQ 383
M ++ A+ W+L + VIG KW ++ KHK +GT++R K L+ K + + +G
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 384 DFTETFSPVIKPGTIRLVLSIALVLKWQIRQLD 416
+ +TFS V K + L+LSI + ++QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 710 MAHTTAELTWLTYLLKEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFVRE 769
M H L W+ L +E + L DN S + L +P+ H SKHIE +HF+R+
Sbjct: 1 MRHVRQAL-WIEMLSEELNAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRD 59
Query: 770 RVAQGLLVTKYIPTTQQVADIFTKPIHKSALANFRSKLRLKPRPSL 815
+V + L +Y T Q+A+IFTKP+ K+ + + +K S+
Sbjct: 60 QVNKMKLDLEYCNTEVQLANIFTKPLKKAMFDELKKLMVMKRLTSM 105
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 415 LDVKNAFLHGHITEDLYMAQPSGMIDSQFPNYVCKLKRALYGLKQAPRAWFDR 467
+DV NAFLHG + ED+YM P G S VCKL+++ Y LK AP+ WF +
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSS-SRLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 658 LQGFADADWAGCPITRRSTTGYCTF-LGSNLISWCAKKQHTVSRSSTEAEYRAMAHTTAE 716
L+G++D+D G + RRST+G C F ISWC K+Q + SS EAEY A +
Sbjct: 13 LEGYSDSDRCGDRMDRRSTSG-CLFKFNDAAISWCTKRQPITALSSCEAEYIAGTFAACQ 71
Query: 717 LTWLTYLLKEFS 728
WL ++KE +
Sbjct: 72 AIWLDNVIKELN 83
>IMGA|Medtr5g043900.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 18173647-18173465 H
EGN_Mt090430 20090702
Length = 60
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 588 SVDATLYRSIVGALQYLTLTRPDIAFSVNFVSQFMHDPTVIHM 630
+ DA+LY S+V L YL LTRPD+AF VN +SQ M +PTV H+
Sbjct: 15 NCDASLYLSLVRPLHYLALTRPDVAFPVNKLSQNMQNPTVFHL 57
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 32/38 (84%)
Query: 348 VIGSKWVFKTKHKSDGTLDRLKARLVAKGFHQVDGQDF 385
++G +WV+K K+K+ G +++ KARLVAKG+ QV+G+DF
Sbjct: 13 IVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr8g081950.1 lectin receptor kinase, related
chr08_pseudomolecule_IMGAG_V3 16974207-16974491 H
EGN_Mt090430 20090702
Length = 94
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 488 IFQSSKGMIALLIYVDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSD 547
I SKG+I L +YV+D L+T S+ ++ F L KEF M DLG + +FL +E TS
Sbjct: 18 IKDKSKGVIILYLYVNDFLITCSNGSYINEFKNDLMKEFEMVDLGHISYFLRMEFQRTSR 77
Query: 548 GLLLNQFHYALTLLDRF 564
++ YA +L RF
Sbjct: 78 ASNSSKEIYASEILKRF 94
>IMGA|Medtr4g104330.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711685-22712637 H
EGN_Mt090430 20090702
Length = 196
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 58/178 (32%)
Query: 502 VDDMLLTGSSAVLLDGFVQLLCKEFAMKDLGQLHHFLGIEVTHTSDGLLLNQ----FHYA 557
+DD+++TGS+ ++ F + EF M DLG+L +FLGI+ TS L+++Q +A
Sbjct: 1 MDDLMVTGSNKAEIEEFKLRMKSEFEMTDLGKLAYFLGIKFMETSRALVMHQEKLDICFA 60
Query: 558 LTLLDRFGMIDSKPMSTPSELQPPVTKAAASVDATLYRSIVGALQYLTLTRPDIAFSVNF 617
+ L RF SKPM T V + R I G +QY I F ++
Sbjct: 61 IGLASRFM---SKPMKT-----------HFLVAKCILRYIKGKIQY------GILFPISQ 100
Query: 618 VSQFMHDPTVIHMKFVHRILRYVKGTLDHGLHFTSNSTLTLQGFADADWAGCPITRRS 675
+++ L L+GF D DW G + R
Sbjct: 101 MTE----------------------------------KLELEGFLDDDWYGDEVEREG 124
>IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr07_pseudomolecule_IMGAG_V3 5264429-5264084 H
EGN_Mt090430 20090702
Length = 98
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 710 MAHTTAELTWLTYLLKEFSIPITVPPILFCDNLSALYLTINPVFHARSKHIELDYHFV 767
MA+TT EL W+ LL + +I P +L C++ +AL++ VFH R+K+I++D HF+
Sbjct: 1 MANTTCELKWIKSLLLDLNILHKGPMLLNCNSQTALHIAKKLVFHYRTKYIQVDCHFI 58
>IMGA|Medtr3g148550.1 Cyclin-like F-box; F-box protein interaction
domain chr03_pseudomolecule_IMGAG_V3 38683285-38681571 E
EGN_Mt090430 20090702
Length = 455
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 325 EEEIAALHKN----ETWTLVPRH-TNMNVIGSKWVFKTKHKSDGTLDRLKARLVAKGFHQ 379
+EE+A N E + RH + VI ++ + DG++ + KARL+AK HQ
Sbjct: 368 DEEVARFDLNAEVIEDMGVNGRHRCSQMVIYNESLLPIGGMRDGSIYKYKARLLAKVLHQ 427
Query: 380 VDGQDFTETFSPVIKPGTIRLVLSIAL 406
G DF+ET SP++KP TI +VL+ L
Sbjct: 428 QGGIDFSETLSPLVKPTTICVVLTTPL 454