Jatropha Genome Database

JcCA0230221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0230221.10 - phase: 0 /partial
         (129 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g143590.1 3 exoribonuclease chr07_pseudomolecule_IMGA...   249   3e-67
IMGA|Medtr3g097940.1 3 exoribonuclease chr03_pseudomolecule_IMGA...   132   4e-32
IMGA|AC233683_7.2 3 exoribonuclease AC233683.2 46787-40903 F EGN...    69   4e-13
IMGA|AC233683_7.1 3 exoribonuclease AC233683.2 46787-43794 F EGN...    55   1e-08
IMGA|Medtr7g084770.2 3 exoribonuclease chr07_pseudomolecule_IMGA...    54   3e-08
IMGA|Medtr7g084770.1 3 exoribonuclease chr07_pseudomolecule_IMGA...    51   2e-07

>IMGA|Medtr7g143590.1 3 exoribonuclease
           chr07_pseudomolecule_IMGAG_V3 34495267-34490674 E
           EGN_Mt090430 20090702
          Length = 270

 Score =  249 bits (635), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/129 (90%), Positives = 126/129 (97%)

Query: 1   MDFVSPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60
           M++VSPEGLR DGRRPMEMRQ+RA+IGAV+KADGSA+FEMGNTKVIAAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIY 120
           Q++D+ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIY
Sbjct: 61  QMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLSADGG 129
           VQVL ADGG
Sbjct: 121 VQVLQADGG 129


>IMGA|Medtr3g097940.1 3 exoribonuclease
           chr03_pseudomolecule_IMGAG_V3 23587526-23581839 H
           EGN_Mt090430 20090702
          Length = 272

 Score =  132 bits (332), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 79/129 (61%), Gaps = 46/129 (35%)

Query: 1   MDFVSPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60
           M++VSPEGLRLDGRRPMEMRQ+RA+IGAV+K                             
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSK----------------------------- 31

Query: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIY 120
                            + GDRMRKPKGDRRSTEISLVIRQTME  ILTHLMPRSQIDIY
Sbjct: 32  -----------------ANGDRMRKPKGDRRSTEISLVIRQTMEERILTHLMPRSQIDIY 74

Query: 121 VQVLSADGG 129
           VQVL ADGG
Sbjct: 75  VQVLQADGG 83


>IMGA|AC233683_7.2 3 exoribonuclease AC233683.2 46787-40903 F
           EGN_Mt090430 20090702
          Length = 258

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR   + R    + GAV  A GSA  E GNTKVI +V+GPRE   ++   +D   + 
Sbjct: 33  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDTGRLN 91

Query: 70  CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIYVQVLSADG 128
           C  S   FST   +R    D +  E S ++ + +E  I+    P++ +D++  VL + G
Sbjct: 92  CNVSYTTFST--PVRGQGSDHK--EYSSMLHKALEGAIILDSFPKTTVDVFALVLESSG 146


>IMGA|AC233683_7.1 3 exoribonuclease AC233683.2 46787-43794 F
           EGN_Mt090430 20090702
          Length = 108

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR   + R    + GAV  A GSA  E GNTKVI +V+GPRE + ++   +D   + 
Sbjct: 33  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDTGRLN 91

Query: 70  CEYSMANFST 79
           C  S   FST
Sbjct: 92  CNVSYTTFST 101


>IMGA|Medtr7g084770.2 3 exoribonuclease
           chr07_pseudomolecule_IMGAG_V3 18382712-18384166 E
           EGN_Mt090430 20090702
          Length = 111

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 12/114 (10%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQAL-V 68
           R DGR P ++R L      + +A GSA +  G TKV+AAVYGP+    +++     ++ V
Sbjct: 5   RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKASIEV 64

Query: 69  RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIYVQ 122
             + +  +    DR           E  +++++T+E+  +  + P +   + VQ
Sbjct: 65  IWKPNTGHVGQADR-----------EYEMILKKTLESICIRTIYPNTTTSVIVQ 107


>IMGA|Medtr7g084770.1 3 exoribonuclease
           chr07_pseudomolecule_IMGAG_V3 18382712-18386084 E
           EGN_Mt090430 20090702
          Length = 241

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQAL-V 68
           R DGR P ++R L      + +A GSA +  G TKV+AAVYGP+    +++     ++ V
Sbjct: 5   RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKASIEV 64

Query: 69  RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIYV 121
             + +  +    DR           E  +++++T+E+  +  + P +   + V
Sbjct: 65  IWKPNTGHVGQADR-----------EYEMILKKTLESICIRTIYPNTTTSVIV 106