Jatropha Genome Database

JcCA0229911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0229911.10 + phase: 0 /partial
         (185 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g111910.1 DNA polymerase epsilon subunit B chr07_pseu...   332   5e-92

>IMGA|Medtr7g111910.1 DNA polymerase epsilon subunit B
           chr07_pseudomolecule_IMGAG_V3 26395853-26403460 E
           EGN_Mt090430 20090702
          Length = 454

 Score =  332 bits (852), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 147/181 (81%), Positives = 169/181 (93%)

Query: 5   QNLAPKDQSRLSEPVKELDIFLSQIAAGVPLDIMPGPNDPANFSLPQQSLHRCLFPGSAT 64
           QNL  KD S+++EPVKELDI L+QIAAG+PLDIMPGP DPANFSLPQQ+LH+CLFPGS+ 
Sbjct: 237 QNLVSKDLSKMAEPVKELDIMLNQIAAGLPLDIMPGPCDPANFSLPQQALHKCLFPGSSV 296

Query: 65  YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNT 124
           YNTF+SCTNPHCFELD IRFLGTSGQN+DDLEKYSEAKDKL+F+ERTL+WRHLAPTAPNT
Sbjct: 297 YNTFKSCTNPHCFELDGIRFLGTSGQNVDDLEKYSEAKDKLDFMERTLRWRHLAPTAPNT 356

Query: 125 LGCYPFTDRDPFLIESCPHVYFVANQDKYGTRMLKGPEGQLIRLISIPKFSETGVAVMVS 184
           LGCYP+TDRDPF IESCPHVYFV NQDKY TR++KG EGQL+RL+ +PKFSETGVAVM++
Sbjct: 357 LGCYPYTDRDPFFIESCPHVYFVGNQDKYDTRVIKGSEGQLVRLVCVPKFSETGVAVMLN 416

Query: 185 I 185
           +
Sbjct: 417 L 417