Jatropha Genome Database

JcCA0224581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224581.10 - phase: 0 /partial
         (319 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099370.1 Amidase chr01_pseudomolecule_IMGAG_V3 20289...   390   e-109
IMGA|Medtr4g154900.1 Amidase; chr04_pseudomolecule_IMGAG_V3 3813...   258   4e-69
IMGA|Medtr4g143970.1 Amidase chr04_pseudomolecule_IMGAG_V3 36080...    78   5e-15
IMGA|Medtr3g064520.1 Glutamyl-tRNA(Gln) amidotransferase A subun...    74   6e-14
IMGA|Medtr2g010220.1 Amidase chr02_pseudomolecule_IMGAG_V3 24311...    70   1e-12
IMGA|Medtr3g142560.1 Glutamyl-tRNA, related chr03_pseudomolecule...    70   1e-12
IMGA|Medtr4g145040.1 Amidase chr04_pseudomolecule_IMGAG_V3 36688...    62   5e-10
IMGA|Medtr4g147350.1 Amidase chr04_pseudomolecule_IMGAG_V3 36953...    57   1e-08
IMGA|Medtr4g144770.1 Amidase chr04_pseudomolecule_IMGAG_V3 36535...    53   2e-07

>IMGA|Medtr1g099370.1 Amidase chr01_pseudomolecule_IMGAG_V3
           20289928-20293602 F EGN_Mt090430 20090702
          Length = 423

 Score =  390 bits (1003), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/319 (62%), Positives = 226/319 (70%), Gaps = 30/319 (9%)

Query: 1   MARNPDYGAFMEKFVLKPTNSSDELPLNGLTFAVKDIFDVDGYVTGFGNPDWARTHLAAT 60
           M    DYGAFMEKF+L P +SS + PLN LTFAVKDIFDV GYV GFGNPDWARTH AAT
Sbjct: 1   METASDYGAFMEKFILPPNSSSPDFPLNSLTFAVKDIFDVKGYVAGFGNPDWARTHQAAT 60

Query: 61  STAPAVLAILREGATCIGKTVMDEMAYSINGENKHYGTPINPCAPDCVPXXXXXXXXXXX 120
           STAP VLAIL  GATC+GKTVMDEMAYSINGEN HYGTP NPCA D VP           
Sbjct: 61  STAPTVLAILSAGATCVGKTVMDEMAYSINGENIHYGTPRNPCAEDRVPGGSSSGSAVAV 120

Query: 121 XXKLVDFSLGTDTGGSVRVPASYCSILGFRPSHGVVSTAGVIPLAQSFDTVGWFARNPVI 180
             KLVDFSLGTDTGGSVRVPASYC I GFRPSHG +S +GV+P+AQSFDTVGWFAR+P I
Sbjct: 121 GAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGRISKSGVVPMAQSFDTVGWFARDPKI 180

Query: 181 LNHVGRVLLQLPDLDLVRPSQIIIAEDCFQLSSIPNGRVSQILVKSVEKLFGGQFSVIYE 240
           L+ VG VLLQ P +  +RP+QIIIAEDCFQLSS+P   VS+I++K+++KL+G        
Sbjct: 181 LSAVGHVLLQSPRITPIRPTQIIIAEDCFQLSSVPFDVVSRIVIKAIQKLYGD------- 233

Query: 241 LFWNPADSLGILRNIYMFRNGPSHVVKHLTLGDYVENKVPSLKHFMSKEIKEQXYXIXXX 300
                    G+LR  Y F            LG+YV+ +VP LKHFMS+E  +Q Y I   
Sbjct: 234 ---------GLLR--YEF------------LGEYVKAQVPGLKHFMSQEKTDQIYNIPSL 270

Query: 301 XXXXXXMRLLERYEFKNNH 319
                 MRLL+RYEFKNNH
Sbjct: 271 AALSSAMRLLQRYEFKNNH 289


>IMGA|Medtr4g154900.1 Amidase; chr04_pseudomolecule_IMGAG_V3
           38132384-38125749 E EGN_Mt090430 20090702
          Length = 591

 Score =  258 bits (658), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 132/294 (44%), Positives = 176/294 (59%), Gaps = 39/294 (13%)

Query: 30  LTFAVKDIFDVDGYVTGFGNPDWARTHLAATSTAPAVLAILREGATCIGKTVMDEMAYSI 89
           LTFA+ D+FD++G+V+ FG+P+WARTH  A+ST+PAV  +++ GATCI  TV+D ++Y I
Sbjct: 63  LTFAISDLFDIEGHVSTFGHPEWARTHEPASSTSPAVSTLVQSGATCIATTVLDNLSYGI 122

Query: 90  NGENKHYGTPINPCAPDCVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASYCSILGF 149
           +GENKH+GTP NP  P  VP               VDFSLG DT G VRVPA +C ILGF
Sbjct: 123 SGENKHFGTPSNPAIPARVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 182

Query: 150 RPSHGVVSTAGVIPLAQSFDTVGWFARNPVILNHVGRVLLQLPDLDLVRPSQIIIAEDCF 209
           RPSHG VS  G+IP++ S DTVGWFA++P IL  VG +LLQ P +    P QIIIA+DCF
Sbjct: 183 RPSHGAVSHGGIIPVSTSLDTVGWFAKDPDILRRVGHILLQAPFVMQRSPRQIIIADDCF 242

Query: 210 QLSSIPNGRVSQILVKSVEKLFGGQFSVIYELFWNPADSLGILRNIYMFRNGPSHVVKHL 269
           Q  ++P  R SQ+++K+ EKLFG Q                              V+KH+
Sbjct: 243 QHLNVPLDRSSQVVIKATEKLFGKQ------------------------------VLKHI 272

Query: 270 TLGDYVENKVPSLKHFMSK----EIKEQXYXIXXXXXXXXXMRLLERYEFKNNH 319
            L  Y+ +KVPSLK    +    E+K     +         M+ L+R+EF + H
Sbjct: 273 NLEGYIRSKVPSLKACSGQKANGELKSSSLIL-----LANIMQFLQRHEFGHMH 321


>IMGA|Medtr4g143970.1 Amidase chr04_pseudomolecule_IMGAG_V3
           36080346-36086355 E EGN_Mt090430 20090702
          Length = 609

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 27  LNGLTFAVKDIFDVDGYVTGFGNPDWARTHLAATSTAPAVLAILREGATCIGKTVMDEMA 86
           L+G+  A+KD  D   Y T  G   W       T  A  +  +   GA  +GKT M E+ 
Sbjct: 203 LDGVPVAIKDEIDCLPYPTT-GGTKWLHKQRPCTDDACCIKRLRLCGAVLVGKTNMHELG 261

Query: 87  YSINGENKHYGTPINPCAPDCVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASYCSI 146
              +G N HYG   NP     +               L   +LG D GGSVR+PA+ C I
Sbjct: 262 AGTSGINPHYGATRNPHNASRIAGGSSSGSAAVVSAGLCPVALGVDGGGSVRMPAALCGI 321

Query: 147 LGFRPSHGVVSTAGVIPLAQSFDTVGWFA 175
           +G +P+   +  +GVIPL  +   VG  A
Sbjct: 322 VGLKPTFSRIPHSGVIPLNWTVGMVGILA 350


>IMGA|Medtr3g064520.1 Glutamyl-tRNA(Gln) amidotransferase A subunit
           chr03_pseudomolecule_IMGAG_V3 14730195-14738883 E
           EGN_Mt090430 20090702
          Length = 537

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 26  PLNGLTFAVKD-IFDVDGYVTGFGNP-DWARTHLAATSTAPAVLAILREGATCIGKTVMD 83
           PL G+  AVKD I   D   TG     D  R    AT    AV  +   G   +GKT MD
Sbjct: 106 PLAGVLVAVKDNICTADMPSTGGSRILDGYRPPFDAT----AVKRVKELGGIVVGKTNMD 161

Query: 84  EMAYSINGENKHYGTPINPCAPDCVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASY 143
           E       E   +    NP     VP             +    SLG+DTGGSVR PAS+
Sbjct: 162 EFGMGSTTEASAFQVTANPWDVSRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASF 221

Query: 144 CSILGFRPSHGVVSTAGVIPLAQSFDTVGWFARN 177
           C ++G +P++G VS  G++  A S D +G F  +
Sbjct: 222 CGVVGLKPTYGRVSRFGLMAYASSLDAIGCFGSS 255


>IMGA|Medtr2g010220.1 Amidase chr02_pseudomolecule_IMGAG_V3
           2431112-2441184 F EGN_Mt090430 20090702
          Length = 607

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 1/149 (0%)

Query: 27  LNGLTFAVKDIFDVDGYVTGFGNPDWARTHLAATSTAPAVLAILREGATCIGKTVMDEMA 86
           L+G+  A+KD  D   + +  G   W          A  V  +   G   IGKT M E  
Sbjct: 196 LDGIFIAIKDDIDCHPHPS-TGGSTWMHEVRDVKKDAVCVSRLRSCGVIFIGKTNMHEFG 254

Query: 87  YSINGENKHYGTPINPCAPDCVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASYCSI 146
               G N +YGT  NP APD                 L   +LGTD GGSVR+P+S C +
Sbjct: 255 MGTTGNNSNYGTARNPHAPDRYTGGSSSGPAAIVASGLCSAALGTDGGGSVRIPSSLCGV 314

Query: 147 LGFRPSHGVVSTAGVIPLAQSFDTVGWFA 175
           +G + ++G  S  G +  + + + +G  A
Sbjct: 315 VGLKINYGRTSMEGSLCDSGTVEVIGPIA 343


>IMGA|Medtr3g142560.1 Glutamyl-tRNA, related
           chr03_pseudomolecule_IMGAG_V3 36557034-36551772 E
           EGN_Mt090430 20090702
          Length = 607

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 27  LNGLTFAVKDIFDVDGYVTGFGNPDWARTHLAATSTAPAVLAILREGATCIGKTVMDEMA 86
           L+G+  A+KD  D   Y T  G   W          A  V  + + G   +GK+ M E+ 
Sbjct: 202 LDGVPVAIKDEIDCLPYPTT-GGTKWLHKERPCKDDACCVKRLRQCGTILVGKSNMHELG 260

Query: 87  YSINGENKHYGTPINPCAPDCVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASYCSI 146
              +G N HYG   NP     +               L   +LG D GGSVR+PA+ C +
Sbjct: 261 SGTSGINPHYGPTRNPYDCKKIAGGSSGGSASLVSAGLCPVALGVDGGGSVRMPAALCGV 320

Query: 147 LGFRPSHGVVSTAGVIPLAQSFDTVGWFA 175
           +G +P+   +   GV+P+  +   VG  A
Sbjct: 321 VGLKPTFARIPHDGVLPINWTVGMVGILA 349


>IMGA|Medtr4g145040.1 Amidase chr04_pseudomolecule_IMGAG_V3
           36688403-36695073 E EGN_Mt090430 20090702
          Length = 633

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 29/176 (16%)

Query: 10  FMEKFVLKPTNSSDEL--------PLNGLTFAVKDIFDVDGYVTGFGNPDWARTHLAATS 61
           + E+   K    +DEL        PL+G+ + +KDI  V  Y T +G+            
Sbjct: 217 YTEELASKQAKEADELLSQGVYLGPLHGIPYGLKDIISVPEYKTTWGS------------ 264

Query: 62  TAPAVLAILREGATCIGKTVMDEMAYSINGENKHYGTPINPCAPDCVPXXXXXXXXXXXX 121
                  +   GA  + K V   +AY    +    G   NP   +               
Sbjct: 265 ------KLKSAGAVLVAKLVSGSLAYD---DVWFGGRTRNPWNIEEFSTGSSAGPAASTS 315

Query: 122 XKLVDFSLGTDTGGSVRVPASYCSILGFRPSHGVVSTAGVIPLAQSFDTVGWFARN 177
             +V F++G++T GS+  PA+ C +   RP+ G V   G++ +++S D +G F R+
Sbjct: 316 AGMVPFAIGSETAGSITYPAARCGVTALRPTFGTVGRTGIMSISESLDKLGPFCRS 371


>IMGA|Medtr4g147350.1 Amidase chr04_pseudomolecule_IMGAG_V3
           36953994-36947145 E EGN_Mt090430 20090702
          Length = 517

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 32/202 (15%)

Query: 65  AVLAILRE-GATCIGKTVMDEMAY-----SINGENKHYGTPINPCAPDCVPXXXXXXXXX 118
            V+  LRE GA  +GK  + E ++     + NG +   G   NP      P         
Sbjct: 138 GVVTKLREAGAIILGKATLSEWSHFRTFGAPNGWSARGGLGKNPYTLG-EPCGSSSGSAI 196

Query: 119 XXXXKLVDFSLGTDTGGSVRVPASYCSILGFRPSHGVVSTAGVIPLAQSFDTVGWFARNP 178
                LV  SLGT+T GS+  P++  S++G +P+ G+ S AGV+P++   DTVG   R  
Sbjct: 197 SVAANLVTLSLGTETDGSILCPSNMNSVVGIKPTVGLTSRAGVVPVSPRQDTVGPICRT- 255

Query: 179 VILNHVGRVLLQLPDLDLVRPSQIIIAEDCFQLSSIPNGRVSQILVKSVEKLFGGQFSVI 238
             ++    VL  +  +D    + I  ++       IP G  +Q L K+  +         
Sbjct: 256 --VSDAAYVLETIAAIDTFNNATIEASK------YIPKGGYAQFLKKNGLR--------- 298

Query: 239 YELFWNPADSLGILRNIYMFRN 260
                     LG++R+ Y F N
Sbjct: 299 -------GKRLGVVRHYYNFGN 313


>IMGA|Medtr4g144770.1 Amidase chr04_pseudomolecule_IMGAG_V3
           36535147-36541817 E EGN_Mt090430 20090702
          Length = 650

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 29/167 (17%)

Query: 10  FMEKFVLKPTNSSDEL--------PLNGLTFAVKDIFDVDGYVTGFGNPDWARTHLAATS 61
           + E+   K    +DEL        PL+G+ + +KDI  V  Y T +G+            
Sbjct: 217 YTEELASKQAKEADELLSQGVYLGPLHGIPYGLKDIISVPEYKTTWGS------------ 264

Query: 62  TAPAVLAILREGATCIGKTVMDEMAYSINGENKHYGTPINPCAPDCVPXXXXXXXXXXXX 121
                  +   GA  + K V   +AY    +    G   NP   +               
Sbjct: 265 ------KLKSAGAVLVAKLVSGSLAYD---DVWFGGRTRNPWNIEEFSTGSSAGPAASTS 315

Query: 122 XKLVDFSLGTDTGGSVRVPASYCSILGFRPSHGVVSTAGVIPLAQSF 168
             +V F++G++T GS+  PA+ C +   RP+ G V   G++ +++S 
Sbjct: 316 AGMVPFAIGSETAGSITYPAARCGVTALRPTFGTVGRTGIMSISESL 362