Jatropha Genome Database

JcCA0224481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224481.10 - phase: 1 /pseudo/partial
         (333 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g114320.1 Homeobox chr02_pseudomolecule_IMGAG_V3 2699...   364   e-101
IMGA|Medtr4g079080.1 Homeobox chr04_pseudomolecule_IMGAG_V3 1566...   224   4e-59
IMGA|Medtr4g079090.1 NDX1 homeobox protein, putative chr04_pseud...    87   9e-18
IMGA|Medtr4g079890.1 NDX1 homeobox protein, putative chr04_pseud...    80   1e-15
IMGA|Medtr4g079100.1 NDX1 homeobox protein, putative chr04_pseud...    54   9e-08

>IMGA|Medtr2g114320.1 Homeobox chr02_pseudomolecule_IMGAG_V3
           26999416-27005254 E EGN_Mt090430 20090702
          Length = 748

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/297 (62%), Positives = 219/297 (73%), Gaps = 5/297 (1%)

Query: 20  CQQCEASLQFLQSLCQQKLFRERLLRNKELCGKGGVLFLAHGILKLKITAPFVESSTVVA 79
           CQQCEASLQ L+SLCQQKLF+E+LLRNKELCGKGG+L LA  ILKL I  P+  S+ + A
Sbjct: 64  CQQCEASLQLLRSLCQQKLFKEQLLRNKELCGKGGILLLAQSILKLHIQ-PYT-SNRIAA 121

Query: 80  AVSRLKAKVLSILLHLCEAESISYLDEVASSPGSLDXXXXXXXXXXXXXXXXXXKDPKHL 139
           A+SRLKAK+LSILL LCEAESISYLDEVAS+  SLD                  ++P HL
Sbjct: 122 AISRLKAKILSILLSLCEAESISYLDEVASTARSLDLSKSVALEVFDLLKKAFGRNPGHL 181

Query: 140 SACSERTFPMGLLRLNAMRLADIFSDDSNFRSYITTCFTKVLTAIFSLPHGEFLSIWCSS 199
           +A  +R+ PMGL++LNAMRLADIFSDDSNFRSY+  CFT+VLTAI SL HG+FLS WCSS
Sbjct: 182 AA--DRSHPMGLVQLNAMRLADIFSDDSNFRSYMILCFTEVLTAIISLSHGDFLSCWCSS 239

Query: 200 ELPPREEDATLEYDVFTAAGWFLDTFSSLDQSSAINLEITLIPSNMPQATYAHQRTSLFV 259
            L   EEDA++EYD+  A GW L   +S D   A NLE  L PS+M +A+YAH RTSLFV
Sbjct: 240 NLSETEEDASIEYDISAAVGWVLHN-TSPDVKDATNLEFNLTPSSMLKASYAHHRTSLFV 298

Query: 260 KVIANLHCFVPNICEEQERNLFLHKFCECMRMNPSESLPGFSFTSGANKAITVCRNL 316
           K  ANLHCFVPN+CEEQERNLF+ K  EC++M+ S  LPGFSF + A K     +NL
Sbjct: 299 KFFANLHCFVPNVCEEQERNLFVRKVIECLQMDLSNLLPGFSFDTDAPKVSIASKNL 355


>IMGA|Medtr4g079080.1 Homeobox chr04_pseudomolecule_IMGAG_V3
           15661054-15654628 E EGN_Mt090430 20090702
          Length = 613

 Score =  224 bits (571), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 131/175 (74%)

Query: 142 CSERTFPMGLLRLNAMRLADIFSDDSNFRSYITTCFTKVLTAIFSLPHGEFLSIWCSSEL 201
            ++R +P+GLL++NAMR+ADIFSDD+ FRSYITT FTKVLTAI S+ H +FLS WCSS L
Sbjct: 32  TTDRRYPIGLLQINAMRVADIFSDDTCFRSYITTYFTKVLTAIISVSHADFLSSWCSSNL 91

Query: 202 PPREEDATLEYDVFTAAGWFLDTFSSLDQSSAINLEITLIPSNMPQATYAHQRTSLFVKV 261
              EEDA++EYD+F + GW LD  SS+D  +   LE+ +I + MP A+YAH RTSL VK+
Sbjct: 92  SETEEDASVEYDLFASVGWILDNSSSMDLQNPTVLELHMIRNIMPSASYAHNRTSLLVKI 151

Query: 262 IANLHCFVPNICEEQERNLFLHKFCECMRMNPSESLPGFSFTSGANKAITVCRNL 316
           IANLHC VP  CEE ERN F   F EC++M+ S+ LPGFSF S A KA TV +NL
Sbjct: 152 IANLHCHVPGRCEESERNFFFRTFLECLQMDLSKLLPGFSFASDAPKAATVSKNL 206


>IMGA|Medtr4g079090.1 NDX1 homeobox protein, putative
           chr04_pseudomolecule_IMGAG_V3 15662618-15661749 L
           EGN_Mt090430 20090702
          Length = 79

 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 55/68 (80%), Gaps = 2/68 (2%)

Query: 48  ELCGKGGVLFLAHGILKLKITAPFVESSTVVAAVSRLKAKVLSILLHLCEAESISYLDEV 107
           ELCGKG +LFLA  ILKL I + F   + +VA +SRLKAK+LSILL LCEAE+IS++D+V
Sbjct: 2   ELCGKGSILFLAQSILKLNIESSF--PTRIVAGISRLKAKILSILLSLCEAENISFVDQV 59

Query: 108 ASSPGSLD 115
           A+SP SLD
Sbjct: 60  ATSPQSLD 67


>IMGA|Medtr4g079890.1 NDX1 homeobox protein, putative
           chr04_pseudomolecule_IMGAG_V3 16234889-16229708 E
           EGN_Mt090430 20090702
          Length = 104

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 42/56 (75%)

Query: 229 DQSSAINLEITLIPSNMPQATYAHQRTSLFVKVIANLHCFVPNICEEQERNLFLHK 284
           D S   NLE  L PSNM + +YAH RTSLFVK  ANLHCFVPN+C EQERNLF+ K
Sbjct: 36  DISMESNLEFNLTPSNMLKDSYAHHRTSLFVKFFANLHCFVPNVCVEQERNLFVCK 91


>IMGA|Medtr4g079100.1 NDX1 homeobox protein, putative
           chr04_pseudomolecule_IMGAG_V3 15666744-15664338 H
           EGN_Mt090430 20090702
          Length = 260

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 26/28 (92%)

Query: 20  CQQCEASLQFLQSLCQQKLFRERLLRNK 47
           CQQCEASLQF+ +LCQQKLF+ERLL NK
Sbjct: 226 CQQCEASLQFIHALCQQKLFKERLLNNK 253