Jatropha Genome Database

JcCA0224291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224291.10 + phase: 0 /partial
         (71 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100750.1 AAA ATPase, central region chr03_pseudomole...    80   2e-16
IMGA|Medtr5g020710.1 hypothetical protein chr05_pseudomolecule_I...    75   6e-15
IMGA|Medtr3g100710.1 AAA ATPase, central region chr03_pseudomole...    67   2e-12
IMGA|Medtr3g163740.1 DNA polymerase III clamp loader subunit, C-...    59   5e-10

>IMGA|Medtr3g100750.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24245152-24251862 F
           EGN_Mt090430 20090702
          Length = 355

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%)

Query: 2   LWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGA 61
           LWV+KYRP++LD V AH DI   + +L TE   PHLL YGP G+GK + I+A+ R+++GA
Sbjct: 33  LWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGA 92

Query: 62  SAEKVKVE 69
               + +E
Sbjct: 93  QYHNMILE 100


>IMGA|Medtr5g020710.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 7831697-7834680 H
           EGN_Mt090430 20090702
          Length = 686

 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 2   LWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
           LW DK++P +LD  I ++  AQ LK+LV++  CPH+L  GPSGSGK+ L MA LR+I+G
Sbjct: 413 LWADKHKPASLDGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREIYG 471


>IMGA|Medtr3g100710.1 AAA ATPase, central region
          chr03_pseudomolecule_IMGAG_V3 24169522-24164910 E
          EGN_Mt090430 20090702
          Length = 339

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
          WV+KYRPK +  V   E++ + L   +    CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63 AEKVKV 68
            K +V
Sbjct: 71 LYKSRV 76


>IMGA|Medtr3g163740.1 DNA polymerase III clamp loader subunit,
           C-terminal chr03_pseudomolecule_IMGAG_V3
           43063765-43070872 E EGN_Mt090430 20090702
          Length = 800

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 2   LWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQ-DCPHLLFYGPSGSGKKTLIMALLRQIFG 60
           LW  KY+PK L   I + D A  LK LV     C H +F GP   GK+++I A+LR++FG
Sbjct: 421 LWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFG 480

Query: 61  ASAEKVKVE 69
           A   +V  E
Sbjct: 481 ADGVQVTEE 489