Jatropha Genome Database

JcCA0217021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0217021.10 - phase: 2 /partial
         (227 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g143840.1 riboflavin biosynthesis protein-related, pu...   298   2e-81

>IMGA|Medtr1g143840.1 riboflavin biosynthesis protein-related,
           putative chr01_pseudomolecule_IMGAG_V3 31882522-31885577
           E EGN_Mt090430 20090702
          Length = 371

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/228 (64%), Positives = 178/228 (78%), Gaps = 3/228 (1%)

Query: 1   APIVAKCDRSRVLATWAPYCGNIAPTEFQIEFSSVRHLNPRQFVEKLSNELKVCGVVAGE 60
           APIVAKCDR RVL++W PYCGN+ P EF+IEFSSVRHL+PRQFVEKL+ EL+V GVVAGE
Sbjct: 143 APIVAKCDRKRVLSSWFPYCGNMVPEEFEIEFSSVRHLSPRQFVEKLAKELRVRGVVAGE 202

Query: 61  NYRFGYKAAGDASELVRLCEEYGMEAYIIKSVMDKNKDLRNMNLS-DLKDRGQVSSTRVR 119
           NYRFGYKAAGDASEL +LCEEY MEAYIIKSVMDKN+   N+N S   K+RGQVSSTRVR
Sbjct: 203 NYRFGYKAAGDASELQKLCEEYEMEAYIIKSVMDKNQYSTNINSSIGSKERGQVSSTRVR 262

Query: 120 HALAVGDMKYVSELLGRRHRLVMMLKDQKGLTSTSSKWKFSITRSCLLNLPPKDGFYENC 179
            ALAVGDM+YVSELLGR+HRLV+M  D++  T + S++K S  +SCLLNL PK+G YE C
Sbjct: 263 EALAVGDMRYVSELLGRQHRLVLMATDRE--TFSFSQYKVSAPKSCLLNLAPKEGLYEKC 320

Query: 180 FLIFGNAEPVKCSVFIDSTYIHLEIDEIGLSNYNSSQAFQLMGVEFGD 227
            L+ G    + C V IDS ++H+E D  G S+   +   Q + +EFGD
Sbjct: 321 SLLLGQENVMLCRVIIDSKFVHIETDYGGSSDIFGTHDLQYLLIEFGD 368