Jatropha Genome Database

JcCA0214811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0214811.10 - phase: 0 /pseudo
         (162 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g101010.1 UBA/THIF-type NAD/FAD binding fold; Rhodane...   235   6e-63

>IMGA|Medtr5g101010.1 UBA/THIF-type NAD/FAD binding fold;
           Rhodanese-like chr05_pseudomolecule_IMGAG_V3
           40405967-40401475 E EGN_Mt090430 20090702
          Length = 465

 Score =  235 bits (600), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 121/126 (96%)

Query: 1   MHRQVIHTEPFIGQPKVKSAAAACRSINSTIQIVEHQEALRTHNALEIFSQYDVIVDATD 60
           MHRQ+IHTE +IGQPKVKSAAAACR++NS++++VEH+EALRT NALEIFS+YD+IVDATD
Sbjct: 130 MHRQIIHTEAYIGQPKVKSAAAACRAVNSSVEVVEHEEALRTSNALEIFSKYDIIVDATD 189

Query: 61  NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPTTACQRCAD 120
           NAP+RY+ISDCCVVLGKPLVSGAA+GLEGQLT+YN+ GGPCYRCLFPTPPP +ACQ CAD
Sbjct: 190 NAPTRYLISDCCVVLGKPLVSGAAVGLEGQLTIYNHNGGPCYRCLFPTPPPRSACQSCAD 249

Query: 121 SGVLGV 126
           +GVLGV
Sbjct: 250 NGVLGV 255