Jatropha Genome Database
- JcCA0207521.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0207521.20 + phase: 1 /TE/partial
(447 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 181 5e-46
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 167 9e-42
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 167 1e-41
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 166 2e-41
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 164 7e-41
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 158 5e-39
IMGA|Medtr7g045780.1 Retrotransposon gag protein chr07_pseudomol... 156 2e-38
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 156 2e-38
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 153 2e-37
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 151 7e-37
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 146 2e-35
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 129 2e-30
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 125 3e-29
IMGA|Medtr6g069740.1 Zinc finger, C4-type chr06_pseudomolecule_I... 117 2e-26
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 116 2e-26
IMGA|Medtr7g123950.1 Retrotransposon gag protein chr07_pseudomol... 110 1e-24
IMGA|Medtr7g126870.1 hypothetical protein chr07_pseudomolecule_I... 102 3e-22
IMGA|Medtr3g019580.1 Retrotransposon gag protein chr03_pseudomol... 100 2e-21
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 96 4e-20
IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related chr0... 82 6e-16
IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG... 76 3e-14
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 75 1e-13
IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related ... 73 3e-13
IMGA|Medtr3g080970.1 Retrotransposon gag protein chr03_pseudomol... 67 1e-11
IMGA|Medtr3g083340.1 Integrase, catalytic region, related chr03_... 60 2e-09
IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H... 60 3e-09
IMGA|Medtr1g137300.1 TIR-NBS-LRR type disease resistance protein... 59 7e-09
IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule... 57 2e-08
IMGA|Medtr3g083290.1 Integrase, catalytic region, putative chr03... 57 3e-08
IMGA|Medtr8g005190.1 Integrase, catalytic region, related chr08_... 55 8e-08
IMGA|Medtr4g114890.1 gag-pol polyprotein, related chr04_pseudomo... 50 3e-06
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 136/475 (28%), Positives = 225/475 (47%), Gaps = 63/475 (13%)
Query: 29 GTNFLAWSCLL--FIEARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTI 86
G N+ +WS + + + ++DG P D W+ N+L+ +W+INS+ P+I
Sbjct: 38 GENYHSWSMKMRRALAMKNKYKFVDGSIPIPDEDDLNRPAWERCNNLVHTWIINSISPSI 97
Query: 87 SRGYLLLDTAKKIWD--------------AASHET----KQGDLTIAQYFAKLSGLWQEL 128
+ + ++ A +W+ A H+ KQGD I YF +L GLW+EL
Sbjct: 98 AHSVVFIEHAIDMWNDLKDRFMRGDRIRVAQLHQEIANLKQGDHKITDYFTELRGLWEEL 157
Query: 129 DCYQDFQ-----AKCTDDATQVQKLIEVE-RVYDFLAGLNNEYDQIRVQVLG*DPFPSLQ 182
D Y+ CT A + K E RV FL GLN EY + QVL DP P +
Sbjct: 158 DQYRPMPQCTCPMPCTCLAMRNAKGFRAEDRVIQFLIGLNEEYQGVASQVLLMDPMPPIN 217
Query: 183 QAYSFV-Q*EKTRRNAMV----HRSTIDKAGLIS--NSAREYIQDAKNSS---------- 225
+ +S V Q E+ + A+V + S D GL++ N +++ + +S
Sbjct: 218 RVFSLVMQQERKLQYAVVSHVQNTSLEDNTGLVNAVNGQKQFGRGRGGTSYQGRGRGNGR 277
Query: 226 SDKDQLFCDYCGKNRHTKEFCWKLHGRPTK-GRGG-----KRISSSRPQTHISDSGTLSE 279
+ + FC +C + HT E C+K HG P GRGG + + ++ I+ T
Sbjct: 278 GNGNGRFCTFCERTNHTVETCYKKHGYPPNWGRGGGNSYTNMVDAEDTESKINMGSTSRN 337
Query: 280 EPSTAESFSDKEIQSLKRLWSQLD*SSTQTAAS-NFVNSGNA---------FLTFLAKIA 329
+ + + + + Q+L L L+ ++ +T S N V N+ +F +K
Sbjct: 338 DENAGITLTKDQYQNLMSL---LEKNNLETKCSANVVKGSNSISLFESKSLLASFDSKQN 394
Query: 330 KPSWVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTSNIKLSHV 389
P W++D+GA HT F +YSK + T + + +GS++ G + + ++ + +V
Sbjct: 395 DPGWIVDTGATHHTCYDLNWFTSYSKIE-TINVNLPNGSVIEACYIGQVKLSKDLSIDNV 453
Query: 390 LHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLLD 444
L++P+F +NL+SVS + + NCK+ F CI E NT R IG + GLY L+
Sbjct: 454 LYLPKFAVNLISVSKLCREQNCKLEFEADICIIQEKNTLRKIGLAKEKHGLYYLE 508
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 214/466 (45%), Gaps = 77/466 (16%)
Query: 43 ARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIWD- 101
A+ +++G +P + D W+ N LI SW+INS+ +I++ + D A +W+
Sbjct: 7 AKNKLAFINGTIQQPEALDLNRAAWERCNHLIHSWIINSVSDSIAQTIVFHDYASDVWED 66
Query: 102 -----------------AASHETKQGDLTIAQYFAKLSGLWQELDCYQDFQ-----AKCT 139
++ + KQG T+++YF ++ LW+EL+ ++ +C
Sbjct: 67 LKERFSKADRIRISTLRSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPNCSCVHQCR 126
Query: 140 DDATQVQKLIEVE-RVYDFLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAM 198
+A+ + + VE ++ FL GLN+++ ++ Q+L DP PSL + YS V E++ +
Sbjct: 127 CEASTLAHVYRVEDQIMQFLLGLNDQFSVVKTQILLMDPLPSLNKVYSLVIQEESNHTPI 186
Query: 199 VHRSTIDKAGLISNS--------AREYIQDAKNSSSDKDQLFCDYCGKNRHTKEFCWKLH 250
+ T + L++ + + Y + KNSS C +C ++ HT + C+ H
Sbjct: 187 LSLPTEESNILVNATDSKKSYGRGKGYYGNQKNSSRH-----CTFCNRSNHTIDTCYLKH 241
Query: 251 GRPTKGRGGKRISSSRPQTHISDSGTLSEEPSTAES--------------FSDKEIQSLK 296
G P + +S TH S + E +T+ + S + L
Sbjct: 242 GFPHPNKSA----NSNTLTHGSTNSVTVESGNTSNTQQGNGDSSGYSSFSISQDRYEHLV 297
Query: 297 RLWSQLD*SSTQTAASNFVNSGN-------------------AFLTFLAKIAKPSWVIDS 337
L Q + TA S V++ N AF + PSW+IDS
Sbjct: 298 SLLQQA--TLLPTAVSPSVSNSNQLTTSQSIPLATYQSGIHSAFSCSFHVNSIPSWIIDS 355
Query: 338 GANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTSNIKLSHVLHVPRFPI 397
GAN H S+ HF ++ K + + + +G+ + + G++ T + L+HVL+ P F +
Sbjct: 356 GANDHVCFSKTHFTSFYKIKPV-LVTLPNGTSIYVHYAGNVHFTPYLHLTHVLYSPEFKV 414
Query: 398 NLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLL 443
NL+SVS I +L+C V F C+ ++ + RMIG G DGLY L
Sbjct: 415 NLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKL 460
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 214/466 (45%), Gaps = 77/466 (16%)
Query: 43 ARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIWD- 101
A+ +++G +P + D W+ N LI SW+INS+ +I++ + D A +W+
Sbjct: 7 AKNKLAFINGTIQQPEALDLNRAAWERCNHLIHSWIINSVSDSIAQTIVFHDYASDVWED 66
Query: 102 -----------------AASHETKQGDLTIAQYFAKLSGLWQELDCYQDFQ-----AKCT 139
++ + KQG T+++YF ++ LW+EL+ ++ +C
Sbjct: 67 LKERFSKADRIRISTLRSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPNCSCVHQCR 126
Query: 140 DDATQVQKLIEVE-RVYDFLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAM 198
+A+ + + VE ++ FL GLN+++ ++ Q+L DP PSL + YS V E++ +
Sbjct: 127 CEASTLAHVYRVEDQIMQFLLGLNDQFSVVKTQILLMDPLPSLNKVYSLVIQEESNHTPI 186
Query: 199 VHRSTIDKAGLISNS--------AREYIQDAKNSSSDKDQLFCDYCGKNRHTKEFCWKLH 250
+ T + L++ + + Y + KNSS C +C ++ HT + C+ H
Sbjct: 187 LSLPTEESNILVNATDSKKSYGRGKGYYGNQKNSSRH-----CTFCNRSNHTIDTCYLKH 241
Query: 251 GRPTKGRGGKRISSSRPQTHISDSGTLSEEPSTAES--------------FSDKEIQSLK 296
G P + +S TH S + E +T+ + S + L
Sbjct: 242 GFPHPNKSA----NSNTLTHGSTNSVTVESGNTSNTQQGNGDSSGYSSFSISQDRYEHLV 297
Query: 297 RLWSQLD*SSTQTAASNFVNSGN-------------------AFLTFLAKIAKPSWVIDS 337
L Q + TA S V++ N AF + PSW+IDS
Sbjct: 298 SLLQQA--TLLPTAVSPSVSNSNQLTTSQSIPLATYQSGIHSAFSCSFHVNSIPSWIIDS 355
Query: 338 GANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTSNIKLSHVLHVPRFPI 397
GAN H S+ HF ++ K + + + +G+ + + G++ T + L+HVL+ P F +
Sbjct: 356 GANDHVCFSKTHFTSFYKIKPV-LVTLPNGTSIYVHYAGNVHFTPYLHLTHVLYSPEFKV 414
Query: 398 NLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLL 443
NL+SVS I +L+C V F C+ ++ + RMIG G DGLY L
Sbjct: 415 NLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKL 460
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 226/494 (45%), Gaps = 57/494 (11%)
Query: 1 DSMGDGKKVDISFHSESP-SLHISRVKSDGTNFLAWSCLL--FIEARGLQGYLDGGAIKP 57
+S D + V SESP SL I+ K G+N++AWS + + + G+++G P
Sbjct: 5 NSNPDTESVFFVHPSESPNSLSITP-KLTGSNYIAWSRTVERSLGTKNKLGFINGSIPMP 63
Query: 58 VSTDPGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIW----------------- 100
D W+ N L+ SWLINS+ +I+ + DTA ++W
Sbjct: 64 DEDDLNRAAWERCNHLVQSWLINSVSDSIAPTVVFCDTALEVWLDLKERFSKIDRIRIAN 123
Query: 101 -DAASHETKQGDLTIAQYFAKLSGLWQEL-------DCYQDFQAKCTDDATQVQKLIEVE 152
++ + KQG T+ YF ++ LW+EL +C Q +C A+++ K E
Sbjct: 124 LRSSINNLKQGAKTVLDYFTEMKSLWEELSSHRPIPNCVCVHQCRCL--ASRIAKTHRNE 181
Query: 153 -RVYDFLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLIS 211
++ FL LN+++ +R QVL DP PSL + YS V E++ ++ S D +
Sbjct: 182 DQIMQFLTSLNDQFSVVRTQVLLLDPLPSLNKVYSLVVQEESNHASLPSLSVADDTSIQI 241
Query: 212 NSA--REYIQDAKNSSSDKDQLFCDYCGKNRHTKEFCWKLHGRPTKGRGGKRI--SSSRP 267
N+ R + + K+ S K C +C + HT +FC+ HG P + R+ +S
Sbjct: 242 NATDTRRFQRRGKSYSQPKPTRLCTFCNRTNHTVDFCYLKHGFPNVNKTQPRVNVASQED 301
Query: 268 QTHISDSGTLSEEPSTAESFSDKEIQSLKRLWSQ----LD*SSTQTAASNFVNSGNAFLT 323
+ S S ++ SFS ++ L + Q + SST SN + + +
Sbjct: 302 SDAGNSSSGSSTSANSNISFSQDQLTQLVSMLQQANLVVPASSTPQTTSNHIAASPLISS 361
Query: 324 FLAKIA----------------KPSWVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADG 367
++ P W+IDSGAN+H F ++ + + + + + +G
Sbjct: 362 SISASESSAGIPVSFPSSSTNKPPFWLIDSGANEHICCDITFFSSFYRIKPVN-VSLPNG 420
Query: 368 SLVPIAGTGSIDCTSNIKLSHVLHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNT 427
++V + G++ S L+HVL+ P F +NL+SV+ + ++L C F C+ + +
Sbjct: 421 TIVLVHYAGTVSFNSKFYLNHVLYSPNFLLNLISVAKLCESLTCFFHFSLDKCLIQDQQS 480
Query: 428 GRMIGSGSLRDGLY 441
+MIG DGLY
Sbjct: 481 LKMIGLAKQMDGLY 494
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 220/491 (44%), Gaps = 49/491 (9%)
Query: 4 GDGKKVDISFHSESP-SLHISRVKSDGTNFLAWSCLL--FIEARGLQGYLDGGAIKPVST 60
D + V SE P SL I+ K +G+N++AWS + + + G+++G P
Sbjct: 9 SDTESVFFVHPSEGPNSLSITP-KFNGSNYIAWSRTVERSLGTKNKLGFINGSIPMPDED 67
Query: 61 DPGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIW------------------DA 102
D W+ N L+ SWLINS+ +I++ + D+A ++W +
Sbjct: 68 DLNRTAWERCNHLVQSWLINSVSESIAQTIVFCDSALEVWLDLKERFSKIDRIRIANLRS 127
Query: 103 ASHETKQGDLTIAQYFAKLSGLWQELDCYQDFQ-----AKCTDDATQVQKLIEVE-RVYD 156
+ KQG + YF ++ LW+EL ++ C A++V K+ E ++
Sbjct: 128 NINNLKQGSKFVLDYFTEIKSLWEELSSHRPIPNCSCIHPCRCAASKVAKIHRNEDQIMQ 187
Query: 157 FLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSARE 216
FL GLN+++ +R QVL DP PS+ + YS V E++ ++ S + N+
Sbjct: 188 FLTGLNDQFSVVRTQVLLLDPLPSMNKVYSLVVQEESNHASITSLSVSTDTSIQINATEN 247
Query: 217 YIQDAKNSS--SDKDQLFCDYCGKNRHTKEFCWKLHGRPTKGRGGKRISSSRPQTH---- 270
+ S S+K C +C + HT +FC+ HG P + ++++ +
Sbjct: 248 RKPQGRGKSFYSNKPTRLCTFCNRTNHTVDFCYLKHGYPNVNKPSSSVNAASQEDSENGT 307
Query: 271 ISDSGTLSEEPSTAESFSDKEIQSLKRLWSQ----LD*SSTQTAASNFVNSGNAFLT--- 323
IS SG + S + FS +++ L + Q + S SN + S +
Sbjct: 308 ISSSGLGTPASSPSAGFSQEQLAQLVSMLQQSNLVVSAPSPSQVTSNHIASASISTPDSS 367
Query: 324 --FLAKIA-----KPSWVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTG 376
LA ++ P W+IDSGAN+H F ++ + + + + +G+ V G
Sbjct: 368 KGILASVSSLTSKPPFWLIDSGANEHICCDIASFSSFYRIKPV-YVSLPNGNSVLAHFAG 426
Query: 377 SIDCTSNIKLSHVLHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSL 436
++ S LSHVL+ P F +NL+SV+ +L C F C+ + + +MIG
Sbjct: 427 NVFFNSKFHLSHVLYSPHFTLNLISVAKCCDSLTCFFHFSLEKCLIQDQQSLKMIGLAKQ 486
Query: 437 RDGLYLLDDVC 447
+DGLY C
Sbjct: 487 QDGLYKFYPSC 497
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 124/479 (25%), Positives = 219/479 (45%), Gaps = 66/479 (13%)
Query: 14 HSESPSLHISRVKSDGTNFLAWSCLLFIEARGLQGYLDGGAIKPVSTDPGFNKWKSENSL 73
HS+S S + S+G N +A A+ +++G P + D N W+ N L
Sbjct: 10 HSDSESAYFVH-PSEGPNSVA-------AAKNKLSFINGTLPVPDTDDLNHNAWERCNHL 61
Query: 74 IMSWLINSMQPTISRGYLLLDTAKKIWD------------------AASHETKQGDLTIA 115
+ SWLINS+ +I++ + D A +W+ ++ + +QG ++
Sbjct: 62 VHSWLINSVSDSIAQTIVFHDNAFDVWEDLKERFSKVDRIRIARLRSSLNTLRQGAKSVL 121
Query: 116 QYFAKLSGLWQEL-------DCYQDFQAKCTDDATQVQKLIEVE-RVYDFLAGLNNEYDQ 167
YF ++ LW+EL +C+ FQ KC DA V K VE ++ FL GLN ++
Sbjct: 122 DYFTEMKALWEELHSHRPLPNCHCPFQCKC--DAVTVPKSYRVEDQIIQFLTGLNEQFSV 179
Query: 168 IRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSAREYIQDAKNSSS- 226
++ QVL DP P+L + +S V +++ ++ ++ + + N+ E + +
Sbjct: 180 VKTQVLLMDPLPTLNKVFSLVIQKESNNASVPAMVNLEDSSVSINAYDERKSQGRGKGAY 239
Query: 227 DKDQLFCDYCGKNRHTKEFCWKLHGRPTKGRGGKRISSSRPQTHISDSGTLSEEPSTAES 286
+K C +C K HT +FC++ HG P + + ++S SD + + S
Sbjct: 240 NKPTRHCTFCNKTNHTVDFCYQKHGFPNANKPNSQANASS-----SDVAEV-DGSSGVSG 293
Query: 287 FSDKEIQSLKRLWSQLD*---------SSTQTAASNFVNS-------------GNAFLTF 324
S +++ L L Q + S T A+ V+S G T
Sbjct: 294 LSQDKMEQLVALLQQANLIPSSSASSGSVTNHIAAPQVSSCYTTSSSLTPTSAGIINSTT 353
Query: 325 LAKIAKPSWVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTSNI 384
+ ++ W++DSGAN+H F +Y + + + DGS+V + G I+ +
Sbjct: 354 CSSLSNSYWLVDSGANEHICRDLNLFTSYHAISPS-IVTLPDGSIVTVTHAGYINFSPQF 412
Query: 385 KLSHVLHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLL 443
L++VL+ F +NL+SV + ++L+C F P CI + + +MIG + +DGLY L
Sbjct: 413 YLTNVLYSSSFRLNLMSVHKVCESLSCTFQFLPNQCIIQDSTSLKMIGLANQQDGLYKL 471
>IMGA|Medtr7g045780.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 11034924-11036399 H
EGN_Mt090430 20090702
Length = 491
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 212/459 (46%), Gaps = 67/459 (14%)
Query: 43 ARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIWD- 101
A+ +++G +P + D W+ N LI SW+INS+ +I++ + D A +W+
Sbjct: 7 AKNKLAFINGIIQQPEALDLNRAAWERCNHLIHSWIINSVSESIAQNIVFHDYALDVWED 66
Query: 102 -----------------AASHETKQGDLTIAQYFAKLSGLWQELDCYQDFQ-----AKCT 139
++ + KQG T+++YF ++ LW+EL+ ++ +C
Sbjct: 67 LKERFSKADRIRISTLCSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPNCSCIHRCC 126
Query: 140 DDATQVQKLIEVE-RVYDFLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAM 198
+A+ + VE ++ FL GLN+++ ++ Q+L DP PSL + YS V E++ A
Sbjct: 127 CEASTRAHVYRVEDQIMQFLIGLNDQFSIVKTQILLMDPLPSLNKVYSLVIQEESNH-AP 185
Query: 199 VHRSTIDKAGLISNSA---------REYIQDAKNSSSDKDQLFCDYCGKNRHTKEFCWKL 249
+ D++ ++ N A + Y + KNSS C +C + HT + C+
Sbjct: 186 ILSLPADESNILVNVADSKKSYGRGKGYYSNQKNSSRH-----CTFCNRTNHTIDTCYLK 240
Query: 250 HGRPTKGRGGKRISSSRPQTH--ISDSGTLSEEP----STAESFSDKEIQSLKRLWSQLD 303
HG P G +S++ T+ +SG +S + S S + L L Q
Sbjct: 241 HGFPNANIPGNSTASTQGSTNSVTVESGNVSNTEHGNGDSGFSISQDRYEHLVNLLQQA- 299
Query: 304 *SSTQTAASNFVNSGN-------------------AFLTFLAKIAKPSWVIDSGANKHTT 344
+ +A S V++ N AF + P W+IDSGAN H
Sbjct: 300 -TLLSSAVSPSVSTSNQLTTSPSMPIVPYQSGIQSAFSCSFHINSLPIWIIDSGANDHVC 358
Query: 345 GSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTSNIKLSHVLHVPRFPINLLSVSL 404
S+ HF + K + + + +G+ + + G++ T ++ L++VL+ F +NL+SVS
Sbjct: 359 FSKSHFTAFYKIKPV-LVTLPNGNSIYVHYAGNVYFTPHLYLNNVLYSLEFKVNLISVSK 417
Query: 405 ITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLL 443
+ +L+C F C+ ++ + +MIG G +GLY L
Sbjct: 418 MCDSLSCSGNFVSNKCVIQDVTSHKMIGLGDKSNGLYTL 456
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/457 (24%), Positives = 208/457 (45%), Gaps = 46/457 (10%)
Query: 30 TNFLAW--SCLLFIEARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTIS 87
+N+ +W S + A+ ++DG P DP F W N L+ SW++NS++ +I+
Sbjct: 50 SNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAWNRCNMLVHSWIMNSVEDSIA 109
Query: 88 RGYLLLDTAKKIWDAASHETKQGDL------------------TIAQYFAKLSGLWQELD 129
+ + L+ A +W+ QGD ++ ++F L LW+EL+
Sbjct: 110 QSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEFFTALKVLWEELE 169
Query: 130 -------CYQDFQAKCTDDATQVQKLIEVERVYDFLAGLNNEYDQIRVQVLG*DPFPSLQ 182
C + C + E+ R FL GLN+ +D +R Q+L +P P++
Sbjct: 170 AYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTIN 229
Query: 183 QAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSAREYIQDAKNSSSDKD-QLFCDYCGKNRH 241
+ +S V + R + D L++++ + + N +S+ + + C +CG++ H
Sbjct: 230 KIFSMVM--QHERQFKISIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGH 287
Query: 242 TKEFCWKLHGRPTKGRGGKR--------ISSSRPQTHISDSGTLSEEPSTAESF--SDKE 291
T + C++ HG P G K I + + + DS + +T SF + ++
Sbjct: 288 TIDICYRKHGFP-PNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQ 346
Query: 292 IQSLKRLWSQLD*SSTQTAASNFVNSGNAFLTFLAKIAKPS----WVIDSGANKHTTGSR 347
+ L L SS++ S+ N + +T + S W++DSGA+ H S
Sbjct: 347 YEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSI 406
Query: 348 KHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTSNIKLSHVLHVPRFPINLLSVSLITK 407
K F +Y+ I++ +G++ +G+++ + + +VL+V F +NLLSV +
Sbjct: 407 KFFDSYAPIIPV-HIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCM 465
Query: 408 ALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLLD 444
NC VTF C + + +M G G L +GLY L+
Sbjct: 466 DNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLN 502
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 224/483 (46%), Gaps = 51/483 (10%)
Query: 5 DGKKVDISFHSESPSLHISRVKSDGTNFLAWSCLLFIEARGLQG---YLDGGAIKPVSTD 61
D + V SE P+ + DG+N+LAWS + I A G + ++DG P D
Sbjct: 8 DTESVFYVHPSEGPNSVLISPPLDGSNYLAWSRSM-IRAFGAKNKLKFIDGSMEIPDEDD 66
Query: 62 PGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIWD------------------AA 103
N W+ N L+ SW+INS+ P I++ + + A W +
Sbjct: 67 LNRNAWERCNHLVQSWIINSVSPQIAQTLVFHENAIDAWSDLKERFSKADIIRIASLRSK 126
Query: 104 SHETKQGDLTIAQYFAKLSGLWQELDCYQDFQA-----KCTDDATQVQKLIEVE-RVYDF 157
+ KQG ++ +YF ++ LW+EL+ ++ C A + + +E +V F
Sbjct: 127 INNMKQGFKSVLEYFTEMKTLWEELNSHRPMPHCTCPHPCRCAAMREARCYRLEDQVIQF 186
Query: 158 LAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSAREY 217
L GLN++++ ++ QVL DP PS+ + YS V E++ N + S+I++ + N+
Sbjct: 187 LTGLNDQFNVVKTQVLMLDPLPSINKVYSLVVQEES--NNLSLTSSINEPFSVVNATNSR 244
Query: 218 IQDAKN---SSSDKDQLFCDYCGKNRHTKEFCWKLHGRPTKGRGGKRISSSRPQTHIS-D 273
+ SS + C +CGK HT E+C++ HG P +++S +
Sbjct: 245 KPQGRGRGYSSGFRPPRQCTFCGKTNHTVEYCYQKHGHPNFPEQHSSVNASSSNDEVEVQ 304
Query: 274 SGTLSEEPSTAESFSDKEIQSLKRLWSQLD*-----------SSTQTAASNFVNSGNAFL 322
G+ + ST+ + S ++ L L Q++ S+ S+ +S + +
Sbjct: 305 PGSCNTSSSTSSNISQEKYDQLLSLLQQVNLLPAASTPSSSASANHIHTSSVPDSTQSGI 364
Query: 323 T--FLAKIAKPS--WVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSI 378
+ F I S W +DSGAN+H + F ++ K + + +GS V + G+I
Sbjct: 365 SSIFSCSINSKSDVWFLDSGANEHIVNNTHWFTSFHKI-NPRPVNLPNGSSVLVEYAGTI 423
Query: 379 DCTSNIKLSHVLHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRD 438
T L +VL+ P F +NL+S+ + +LNC F+ C+ +L++ +MIG G +
Sbjct: 424 RFTPQFYLENVLYSPSFTLNLISIFKVCSSLNCYAIFHNKQCLLQDLHSQKMIGLGE-QF 482
Query: 439 GLY 441
G+Y
Sbjct: 483 GVY 485
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 123/465 (26%), Positives = 217/465 (46%), Gaps = 54/465 (11%)
Query: 29 GTNFLAWSCLLFIEARGLQG---YLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPT 85
G N+LAW+ + A G + ++DG P D W+ N+LI+SW+INS+ P
Sbjct: 38 GPNYLAWNRSM-KRALGTKNKFVFIDGSVPIPPMDDLNRTAWERCNNLILSWIINSVSPQ 96
Query: 86 ISRGYLLLDTAKKIW------------------DAASHETKQGDLTIAQYFAKLSGLWQE 127
I++ + + A +W ++ + KQGD ++ YF + LW+E
Sbjct: 97 IAQTIVFHEYAIDVWIELQERFSKVDRIRVASLRSSINNLKQGDKSVLDYFTSIKSLWEE 156
Query: 128 LDCYQDFQA-----KCTDDATQVQKLIEVE-RVYDFLAGLNNEYDQIRVQVLG*DPFPSL 181
L+ ++ C ++ + + +E +V FL GLN+ + ++ QVL DP PS+
Sbjct: 157 LNSHRPMPMCTCPYPCRCESMRAARDFRMEDQVIQFLTGLNDSFSVVKTQVLLIDPLPSI 216
Query: 182 QQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNS--AREYIQDAKNS---SSDKDQLFCDYC 236
+ YS V E++ ++ + + ++ N+ AR+ K+S S + +C +C
Sbjct: 217 NKVYSMVIQEESNIIPPTSLASNEDSSILVNASDARKPFLRGKSSGTSQSKNNSRYCTFC 276
Query: 237 GKNRHTKEFCWKLHGRPTKGRGGKRISSSRPQTHISDSGT------------LSEEPSTA 284
+N HT E+C+ H P + S++ H DS T L++E
Sbjct: 277 RRNNHTVEYCYLKHDFPNANKPTAS-SNAVTSEHAVDSHTSSEGTSSSSQTGLTQE-QYV 334
Query: 285 ESFSDKEIQSLKRLWSQLD*SSTQTAASNFVNSG------NAFLTFLAKIAKPSWVIDSG 338
S + SL + + +ST A++F +S N + + W+IDSG
Sbjct: 335 HLVSLLQQSSLVPSATPPNPASTNHVATSFPSSIDFTSGINTIFSCSLHVPSDHWLIDSG 394
Query: 339 ANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTSNIKLSHVLHVPRFPIN 398
AN+H S F +Y + + + + +GS V + G++ + + ++HVL+ P F +
Sbjct: 395 ANEHICSSLHLFHSYYRIKPI-CVNLPNGSSVIVQYAGTVVFSPHFHITHVLYSPSFKVY 453
Query: 399 LLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLL 443
L+SVS I ++L V F + ++ T +MIG G+L DGLY L
Sbjct: 454 LISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLGNLCDGLYRL 498
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/485 (25%), Positives = 218/485 (44%), Gaps = 54/485 (11%)
Query: 5 DGKKVDISFHSESPSLHISRVKSDGTNFLAWSCLL---FIEARGLQGYLDGGAIKPVSTD 61
D + V SE P+ + DGTN+LAWS + F+ L+ ++DG P D
Sbjct: 8 DTESVFYVHPSEGPNSVLVTPLLDGTNYLAWSRSMIRAFVVKNKLK-FVDGYMEIPDEDD 66
Query: 62 PGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIWD------------------AA 103
+ W+ N LI SW+INS+ P I++ + + A W +
Sbjct: 67 LNRSAWERCNHLIQSWIINSVSPPIAQTLVFHENAVDGWSDLKERFSKADKIRIASLRSK 126
Query: 104 SHETKQGDLTIAQYFAKLSGLWQELD-------CYQDFQAKCTDDATQVQKLIEVERVYD 156
+ KQG ++ +YF ++ LW+EL+ C +C Q IE ++V
Sbjct: 127 INNMKQGSKSVLEYFTEMKTLWEELNSHRPMPHCTCPHPCRCAAMRETRQYRIE-DQVMQ 185
Query: 157 FLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSARE 216
FL GLN++++ ++ Q+L DP PS+ + Y V E++ N + S+I + + N+A
Sbjct: 186 FLIGLNDQFNVVKTQILMLDPIPSINRVYYLVVQEES--NNLSLASSITEPFSVVNAADS 243
Query: 217 YIQDAKN---SSSDKDQLFCDYCGKNRHTKEFCWKLHGRPTKGRGGKRISSSRPQTHISD 273
+ S+ K C +CGK+ HT ++C++ HG P + +++S +
Sbjct: 244 RKPQGRGRGYSNGYKPPRQCTFCGKSNHTVDYCYQKHGHPNFPKQNSSVNASSSNDDVEA 303
Query: 274 SGTLSEEPSTAESFSDKEIQSLKRLWSQLD*-----SSTQTAASNFVN----SGNAF--- 321
++ S S ++ L Q++ + T +A +N V+ S +AF
Sbjct: 304 QPGSCSASPSSSSISQEQYDQFLSLLQQVNLLPVASTPTSSATANHVHTSSTSDSAFPIQ 363
Query: 322 ------LTFLAKIAKPSWVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGT 375
+ W +DSGAN+H S F ++ K + + +G+ V +
Sbjct: 364 SGISSIFSCSISSKSDVWFLDSGANEHIVSSTHWFTSFHKI-NPKPVNLPNGTSVLVEYA 422
Query: 376 GSIDCTSNIKLSHVLHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGS 435
G+I T + + VL+ P F +NL+S+ + +L+C +F+ C +L++ +MIG G
Sbjct: 423 GTIHFTPHFYIEDVLYSPSFTLNLISIFKVCSSLHCYASFHDKKCFLQDLHSQKMIGLGE 482
Query: 436 LRDGL 440
GL
Sbjct: 483 QVRGL 487
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 181/394 (45%), Gaps = 53/394 (13%)
Query: 26 KSDGTNFLAWSCLL--FIEARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQ 83
K +GTN+LAWS + + A+ G+++G P + D W+ N L+ SW++NS+
Sbjct: 34 KFNGTNYLAWSRSMQRALGAKCKLGFINGEIPVPDADDLNRTAWERCNHLVQSWILNSLS 93
Query: 84 PTISRGYLLLDTAKKIWDAASHE-------------------TKQGDLTIAQYFAKLSGL 124
+I++ + D+A ++W HE KQG ++ YF +L GL
Sbjct: 94 ESIAQTVVFCDSASEVWQDL-HERFSKTDRIRIATLRSSINILKQGTKSVLDYFTELKGL 152
Query: 125 WQELDCYQDFQ-----AKCTDDATQVQKLIEVE-RVYDFLAGLNNEYDQIRVQVLG*DPF 178
W+E + C +AT+V K E ++ FL GLN+++ ++ Q+L DP
Sbjct: 153 WEEFSSHLPIPNCICVHPCRCEATRVAKTHRTEDQIMQFLTGLNDQFSVVKTQILLLDPL 212
Query: 179 PSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNS--AREYIQDAKNSSS---DKDQLFC 233
PSL + YS V E++ +++ S D + + N+ AR + K SS +K FC
Sbjct: 213 PSLNKVYSMVIQEESNNSSIPSVSVSDDSNIQLNASDARNFQPRGKGPSSGSNNKPTRFC 272
Query: 234 DYCGKNRHTKEFCWKLHGRPTKGRGGKRISSSR-PQTHI----SDSGTLSEEPSTAESFS 288
+C + HT +FC++ HG P + R S++ Q S++ L+ ++ S
Sbjct: 273 SFCKRTNHTVDFCYQKHGYPNVIKQQARTSANNIAQVDFDAASSNASNLNVSANSNTGLS 332
Query: 289 DKEIQSLKRLWSQLD-----------*SSTQTAASNFVNSGNAFLTFLAKIAKPS----W 333
++ L L Q + S+T TA +S +A I+ PS W
Sbjct: 333 QEQFTQLVSLLQQSNLVASSSPSPGPSSNTITATPLVSSSISATEISPTGISFPSHLTHW 392
Query: 334 VIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADG 367
+IDSGAN+H + F ++ K + + + D
Sbjct: 393 LIDSGANEHICCDSRCFSSFYKIKPMQVLYLMDN 426
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 185/424 (43%), Gaps = 50/424 (11%)
Query: 30 TNFLAW--SCLLFIEARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTIS 87
+N+ +W S + A+ ++DG P DP F W N L+ SW++NS++ +I+
Sbjct: 50 SNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAWNRCNMLVHSWIMNSVEDSIA 109
Query: 88 RGYLLLDTAKKIWDAASHETKQGDLTIAQYFAKLSGLWQELDCYQDFQAKCTDDATQVQK 147
+ + L A L C + C +
Sbjct: 110 QSIVFLKNA----------------------IDLEAYLPTPVCACPHRCMCITGVMNAKH 147
Query: 148 LIEVERVYDFLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKA 207
E+ R FL GLN+ +D +R Q+L +P P++ + +S V + R + D
Sbjct: 148 QHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVM--QHERQFKISIPVDDST 205
Query: 208 GLISNSAREYIQDAKNSSSDKD-QLFCDYCGKNRHTKEFCWKLHGRPTKGRGGKRISSSR 266
L++++ + + N +S+ + + C +CG++ HT + C++ H R
Sbjct: 206 ILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHERED------------ 253
Query: 267 PQTHISDSGTLSEEPSTAESF--SDKEIQSLKRLWSQLD*SSTQTAASNFVNSGNAFLTF 324
+ DS + +T SF + ++ + L L SS++ S+ N + +T
Sbjct: 254 ----LDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITR 309
Query: 325 LAKIAKPS----WVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDC 380
++ S W++DSGA+ H S K+F +Y+ I++ +G++ +G++
Sbjct: 310 ISYTMNHSSFGTWIVDSGASDHICSSIKNFDSYAPIIPV-HIKLPNGNMAIAKFSGTVTF 368
Query: 381 TSNIKLSHVLHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGL 440
+ + +VL+V F +NLLSV + NC VTF C + + +M G G L +GL
Sbjct: 369 SPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGL 428
Query: 441 YLLD 444
Y L+
Sbjct: 429 YFLN 432
>IMGA|Medtr6g069740.1 Zinc finger, C4-type
chr06_pseudomolecule_IMGAG_V3 12973766-12974997 H
EGN_Mt090430 20090702
Length = 366
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 159/358 (44%), Gaps = 34/358 (9%)
Query: 5 DGKKVDISFHSESPSLHISRVKSDGTNFLAWSCLLFIE--ARGLQGYLDGGAIKPVSTDP 62
D + V SE P+ + DG+N++AWS + + A+ ++DG P D
Sbjct: 8 DTESVFYVHSSEGPNFVVVAPPLDGSNYIAWSRSMIRDFGAKNKLKFIDGSMEIPDEDDL 67
Query: 63 GFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIWDAASHETKQGDLTIAQYFAKLS 122
N W+ N LI SW+INS+ I++ + + A W + + + +T+ +YF ++
Sbjct: 68 NRNAWERCNHLIQSWIINSISLQIAQTLVFHENATDAW--SDLKERFAKVTVLEYFTEIK 125
Query: 123 GLWQELDCYQDFQA-----KCTDDATQVQKLIEVE-RVYDFLAGLNNEYDQIRVQVLG*D 176
LW+EL+ ++ C A + + +E +V FL GLN++++ ++ QVL D
Sbjct: 126 TLWEELNSHRPMPHCTCPHPCRCAAMREARNFRLEDQVIQFLTGLNDQFNVVKTQVLMLD 185
Query: 177 PFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSAREYIQDAKN---SSSDKDQLFC 233
P PS+ + YS V E++ ++ S ID+ I N + S S K C
Sbjct: 186 PLPSINKVYSLVVQEESNNQSL--SSPIDEPLSIVNVVESRKPQGRGRGYSHSFKPPRHC 243
Query: 234 DYCGKNRHTKEFCWKLHGRPT--KGRGGKRISSSRPQTHISDSGTLSEEPSTAES-FSDK 290
+CGK+ HT EF ++ HG P K +SS + + A S FS
Sbjct: 244 SFCGKSNHTVEFFYQKHGHPNFQKQSSYVNVSSRNDELETQSGSSSEASSILASSPFSAN 303
Query: 291 EIQSLKRLWSQLD*SSTQTAASNFVNSGNAFLTFLAKIAKPS--WVIDSGANKHTTGS 346
I + ++SN N+ F + S W++DSGAN+H S
Sbjct: 304 LIHA--------------PSSSNSFNTSGISSIFSCSLQSKSDLWLLDSGANEHIVSS 347
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 140/281 (49%), Gaps = 29/281 (10%)
Query: 15 SESPSLHISRVKSDGTNFLAW--SCLLFIEARGLQGYLDGGAIKPVSTDPGFNKWKSENS 72
SE PS I K DG+N+LAW S + + G+++G +P D + W+ N
Sbjct: 19 SEGPSSLIVSPKLDGSNYLAWNRSMKRSLGTKNKLGFINGSIEQPDLDDLNRSAWERCNF 78
Query: 73 LIMSWLINSMQPTISRGYLLLDTAKKIWD------------------AASHETKQGDLTI 114
L+ SW+INS+ +I++ + DTA ++W ++ + KQG ++
Sbjct: 79 LVQSWIINSVSDSIAQTVVFYDTAYEVWQDLHERFSKADRIRIANLRSSINNLKQGAKSV 138
Query: 115 AQYFAKLSGLWQELDCYQDFQA-----KCTDDATQVQKLIEVE-RVYDFLAGLNNEYDQI 168
+YF +L LW+EL ++ + C DAT+V K+ E ++ FL GLN+ + +
Sbjct: 139 LEYFTELKSLWEELSSHRPIPSCVCVHACRCDATRVAKIYRTEDQIMQFLTGLNDNFGVV 198
Query: 169 RVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSAREYIQDAKNS---S 225
+ QVL +P P L + YS V E++ + + S D + + N++ + +
Sbjct: 199 KTQVLLLNPLPPLNKVYSLVVQEESNNSLPISISASDDSNIQLNASEVKKSQGRGKGFVN 258
Query: 226 SDKDQLFCDYCGKNRHTKEFCWKLHGRPTKGRGGKRISSSR 266
S K +C +C K HT +FC++LHG P+ + ++++S
Sbjct: 259 SQKPNRYCTFCHKTNHTVDFCYQLHGHPSFPKQQSKVTASH 299
>IMGA|Medtr7g123950.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 29015812-29013196 E
EGN_Mt090430 20090702
Length = 302
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 20/210 (9%)
Query: 14 HSESPSLHISRVKSDGTNFLAWS--CLLFIEARGLQGYLDGGAIKPVSTDPGFNKWKSEN 71
HS++P + + +G N+ WS LL + A+ G +DG P + DP WK N
Sbjct: 39 HSDTPGISLVNQPLNGGNYGEWSRSMLLSLSAKNKLGLIDGTVKAPSADDPKLPLWKRCN 98
Query: 72 SLIMSWLINSMQPTISRGYLLLDTAKKIW----DAASH--------------ETKQGDLT 113
L+++W+++S++P I+R + DTA +W D S E +QG L
Sbjct: 99 DLVLTWILHSIEPDIARSVIFSDTAAAVWSDLHDRFSQGDESRIYQIRQEISECRQGSLL 158
Query: 114 IAQYFAKLSGLWQELDCYQDFQAKCTDDATQVQKLIEVERVYDFLAGLNNEYDQIRVQVL 173
I+ Y+ KL LW EL YQ+ D +V E E+V FL GLN Y Q+R +L
Sbjct: 159 ISDYYTKLKSLWDELGSYQEPITCSCDMLKKVAVREEKEKVMQFLMGLNESYSQVRGSIL 218
Query: 174 G*DPFPSLQQAYSFVQ*EKTRRNAMVHRST 203
+P P ++ + + ++ + ++ R T
Sbjct: 219 MMNPLPDTRKVHGLILQQERQMEVVIRRET 248
>IMGA|Medtr7g126870.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 29583401-29584363 H
EGN_Mt090430 20090702
Length = 302
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 29 GTNFLAWSCLLFIEARGLQG--YLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTI 86
G N+ +WS + + R +++G +P D W S+IMSWL N + P I
Sbjct: 49 GNNYHSWSRSMQVALRSKHKLHFINGTLPRPCDDDHDSIAWDRCKSMIMSWLSNYVDPEI 108
Query: 87 SRGYLLLDTAKKIWDAASHETKQGDLTIAQYFAKLSGLWQELDCYQDFQ-AKCTDDATQV 145
S+ L +DTA +IW+ QG+ +I+ Y+ K+ LWQELD ++ + C DD +
Sbjct: 109 SQSILWMDTALEIWNELKERFYQGESSISSYYTKMKKLWQELDNFRPIPTSNCVDDCKAI 168
Query: 146 QKLIEV---ERVYDFLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFV 188
K+ E ++V FL GLN ++ +R Q++ DP PS+ + YS +
Sbjct: 169 AKMREYKDSDQVIRFLRGLNEQFLAVRSQIMLMDPLPSIGKVYSLL 214
>IMGA|Medtr3g019580.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 4112343-4111299 H
EGN_Mt090430 20090702
Length = 334
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 35/240 (14%)
Query: 49 YLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIWDAASHE-- 106
++DG P D W+ N+L+ +W+INS+ P+I++ + ++ A +W+
Sbjct: 15 FVDGSIEVPDEHDLNRAAWERCNNLVHTWIINSISPSIAQSVVFIENAMDMWNDLKDRFM 74
Query: 107 ----------------TKQGDLTIAQYFAKLSGLWQELDCYQDF-----QAKCTDDATQV 145
KQG + +YF +L GLW+ELD Y+ C+ A +
Sbjct: 75 RGDRIRVAQLQQEISNLKQGSKKVTEYFTELRGLWEELDQYRPMPHCTCPIPCSCLAMRN 134
Query: 146 QKLIEVE-RVYDFLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFV--Q*EKTRRNAMVHRS 202
K +E R+ FL GLN EY + QVL DP P + + +S + Q K + +V +
Sbjct: 135 AKGFRLEDRIIQFLIGLNEEYQSVTSQVLLMDPLPQINRVFSMIMQQERKAQYGIIVAPA 194
Query: 203 TI--DKAGLISNSA---REYIQDAKNSS----SDKDQLFCDYCGKNRHTKEFCWKLHGRP 253
++ D + + N+ R++ + N+ + C++CG++ HT E C+K HG P
Sbjct: 195 SVVEDTSARLVNAVDAQRQFGRGRGNAGFQGRGRGNGRVCNFCGRSNHTMETCYKKHGFP 254
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 33/327 (10%)
Query: 43 ARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAK-KIWD 101
A+ ++DG + P D + W+ NSLI SW++NS+Q S+ +D +
Sbjct: 30 AKNKLSFVDGSILIPPLDDLNRSVWERCNSLIHSWILNSLQERFSK----VDRVRISSLC 85
Query: 102 AASHETKQGDLTIAQYFAKLSGLWQELD-------CYQDFQAKCTDDATQVQKLIEVERV 154
+ KQG + +YF +L LW+EL+ C +C + +E +++
Sbjct: 86 TTINNLKQGTKFVLEYFTELKSLWEELNSHCPMPMCTCPHPCRCESMRSARNFRLE-DQI 144
Query: 155 YDFLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNS- 213
FL GLN+ + ++ QV+ + S+ + YS V E++ + + S+I+ + ++ N+
Sbjct: 145 IQFLTGLNDNFGVVKTQVVIQE---SINKIYSLVIQEESNNSVVTASSSIEDSNILVNAS 201
Query: 214 -AREYIQDAK-NSSSD---KDQLFCDYCGKNRHTKEFCWKLHGRP--TKGRGGKRISSSR 266
AR+ K NS S + +C +C K HT EFC++ HG P KG G +S
Sbjct: 202 DARKPFGRGKLNSGSHPPKNNSKYCSFCHKTNHTLEFCYQKHGFPNANKGSGSTNAVNSE 261
Query: 267 PQTHISDSGTLSEEPSTAESFSDKEIQSLKRLWSQLD*SSTQTAA-SNFVNSG------N 319
S +S+ T E + + SL + S + + T+A +N + S N
Sbjct: 262 GVPESQGSSAISQIGLTQEQYV--HLVSLLQQSSLIIPAPPITSANTNHIISEPSYAGIN 319
Query: 320 AFLTFLAKIAKPSWVIDSGANKHTTGS 346
+ W+IDSGAN+H S
Sbjct: 320 TIFPCCLHVKSNYWLIDSGANEHICSS 346
>IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related
chr05_pseudomolecule_IMGAG_V3 33221869-33220686 H
EGN_Mt090430 20090702
Length = 369
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 28/263 (10%)
Query: 15 SESPSLHISRVKSDGTNFLAWSCLL--FIEARGLQGYLDGGAIKPVSTDPGFNKWKSENS 72
S++P + +G N+ WS + ++A+ G++DG KP + W+ +S
Sbjct: 48 SDNPGTPLVAAVLNGENYRTWSRSMKTALQAKLKLGFIDGTITKPGMKTTNYVNWERADS 107
Query: 73 LIMSWLINSMQPTISRGYLLLDTAKKIWDAASHETKQ-------------------GDLT 113
++ +W+IN+ P + TA+ IW Q +L+
Sbjct: 108 MVTAWIINATDPVLHSSISHASTARDIWLDLEERFAQTNTPRIHQLWRNLCLMQEDDELS 167
Query: 114 IAQYFAKLSGLWQELDCYQDFQAKCTDDAT-QVQKLIEVERVYDFLAGLNNE-YDQIRVQ 171
+ ++ + L EL Q +CT A+ ++ ++ E +R++ FL L+NE Y ++
Sbjct: 168 VTAFYTQFKSLLDELSELQPL-PECTCGASKELMRMEEEQRLHLFLGSLDNEKYGHVKTS 226
Query: 172 VLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSAREYIQDAKNSSSDKDQL 231
+L +P PSL++A++ V E+ + V + + + Y ++ + K +
Sbjct: 227 ILNVEPLPSLRRAFNHVLREEA--HFPVEKEKGNNKMDPGTAFHSYSENKQKRDGPKPK- 283
Query: 232 FCDYCGKNRHTKEFCWKLHGRPT 254
CD+CGK H K C+++ G P+
Sbjct: 284 -CDHCGKVGHPKSKCFEIIGYPS 305
>IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG_V3
33350941-33351963 H EGN_Mt090430 20090702
Length = 326
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 117/259 (45%), Gaps = 34/259 (13%)
Query: 15 SESPSLHISRVKSDGTNFLAWSCLL--FIEARGLQGYLDGGAIKPVSTDPGFNKWKSENS 72
S++P + +G N+ WS + + A+ G++DG KP + W+ +S
Sbjct: 40 SDNPGTPLVAAVLNGENYRTWSRSMKTALRAKLKLGFIDGTITKPGMKTTNYVNWERADS 99
Query: 73 LIMSWLINSMQPTISRGYLLLDTAKKIWDAASHETKQGDLTIAQYFA-----KLSGLWQE 127
++ +W+IN+ P + T + IW L + + FA ++ LW+
Sbjct: 100 MVTAWIINATDPVLHSSISHASTTRDIW-----------LDLEERFAQTNAPRIHQLWRN 148
Query: 128 LDCYQ--------DFQ--AKCTDDAT-QVQKLIEVERVYDFLAGLNNE-YDQIRVQVLG* 175
L Q + Q +CT A+ ++ + E + ++ FL L+NE Y ++ +L
Sbjct: 149 LCLMQKDDELSLSELQPLPECTCGASKELMRREEEQCLHLFLGSLDNEKYGHVKTSILNV 208
Query: 176 DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSAREYIQDAKNSSSDKDQLFCDY 235
+P PSL++A++ V E+ R V + + + Y + +N K + CD+
Sbjct: 209 EPLPSLRRAFNHVLREEAR--FTVEKEKGNNKMDPGTAFHSYSGNKQNRDGPKPK--CDH 264
Query: 236 CGKNRHTKEFCWKLHGRPT 254
CGK H K C+++ G P+
Sbjct: 265 CGKVGHPKSKCFEIIGYPS 283
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 26/200 (13%)
Query: 15 SESPSLHISRVKSDGTNFLAWSCLL--FIEARGLQGYLDGGAIKPVSTDPGFNKWKSENS 72
SE+P + N+ WS + + ++ +++G KP D ++ W ++
Sbjct: 36 SENPGAVLVSTPLTDHNYHNWSRAMKRALSSKNKIRFINGTLPKPSYLDSTYDLWDRCDN 95
Query: 73 LIMSWLINSMQPTISRGYLLLDTAKKIWDAAS------------------HETKQGDLTI 114
+++SW+ ++ P I + + +++A ++W H T+QGD ++
Sbjct: 96 MVLSWITRTLSPHIFQSTICIESAFELWKDLEDRFSKGNFFRVSDLLRDLHSTQQGDRSL 155
Query: 115 AQYFAKLSGLWQELDCYQ-----DFQAKCTDD-ATQVQKLIEVERVYDFLAGLNNEYDQI 168
++YF + LW EL+ + + CT + V+ +E + FL GLN Y +
Sbjct: 156 SKYFTNMKILWDELEDLRPTPSCSYVNPCTCSLSNSVRNYKNMEYIICFLKGLNTIYSNV 215
Query: 169 RVQVLG*DPFPSLQQAYSFV 188
R Q L DP PS+ + YS V
Sbjct: 216 RTQNLLMDPLPSISKVYSLV 235
>IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related
chr05_pseudomolecule_IMGAG_V3 21011474-21012209 E
EGN_Mt090430 20090702
Length = 210
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 326 AKIAKPSWVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTSNIK 385
K SW++DSGA+ H TG+ ++ + G + + + G++ T ++
Sbjct: 29 GKTKLESWILDSGASNHMTGTLQYMHDVKEVIGCP-VGLPNCRTTTCTKEGTVKLTDGLR 87
Query: 386 LSHVLHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLLDD 445
L +VL+VP+ NL+S+S + LNC V F C + + +IG+G RDGLY +
Sbjct: 88 LENVLYVPKLNCNLISISQLLDELNCNVQFNGNFCAIQDRTSKMLIGAGEQRDGLYFFRE 147
Query: 446 V 446
V
Sbjct: 148 V 148
>IMGA|Medtr3g080970.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 19236298-19236945 H
EGN_Mt090430 20090702
Length = 200
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 28 DGTNFLAWSCLLFIEARGLQG---YLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQP 84
DG+N+L W + + A G++ ++D P D N + N LI SW+INS+
Sbjct: 31 DGSNYLGWRRSM-VRAFGMKNKMKFIDVSMEIPNEKDLNPNVRERCNHLIQSWIINSVST 89
Query: 85 TISRGYLLLDTAKKIWDAA----SHETKQGDLTIAQYFAKLSGLWQELD-------CYQD 133
I++ L +I A + KQG + YF ++ LW+EL+ C
Sbjct: 90 QIAQT-LRFSKIDRIRIATLRSKINNVKQGSKYVLDYFTEMKTLWEELNSHHPMPHCTCP 148
Query: 134 FQAKCTDDATQVQKLIEVERVYDFLAGLNNEYDQIRVQVLG*DPFPS 180
+CT + + I ++V FL GLN++++ + QVL DP PS
Sbjct: 149 HPCRCTA-MRETRNFILEDQVIQFLTGLNDQFNVVNTQVLMLDPLPS 194
>IMGA|Medtr3g083340.1 Integrase, catalytic region, related
chr03_pseudomolecule_IMGAG_V3 19557937-19559015 H
EGN_Mt090430 20090702
Length = 294
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 157 FLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSA-- 214
FL GLN+++ ++ QVL +P P L + YS V E+++ V S I + NSA
Sbjct: 17 FLTGLNDQFSIVQTQVLLMEPLPCLNRVYSLVIQEESKD---VFESVILMNPTLDNSADS 73
Query: 215 REYIQDAKNS-SSDKDQLFCDYCGKNRHTKEFCWKLHGRPT---KGRGGKRISSSRPQTH 270
+++ K+S SS C +CG++ HT + C+K HG P + + S H
Sbjct: 74 KKFPGKGKSSFSSGYKSKLCTFCGRHGHTVDTCYKKHGFPPNFGQNSSVNNVESLLDNVH 133
Query: 271 ISDSGTLSEEPSTAESFS 288
++++ EEPS +S S
Sbjct: 134 VAEN---VEEPSKVQSSS 148
>IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr03_pseudomolecule_IMGAG_V3
16240238-16240810 H EGN_Mt090430 20090702
Length = 147
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 108 KQGDLTIAQYFAKLSGLWQELDCYQDFQA-----KCTDDATQVQK-LIEVERVYDFLAGL 161
KQG + ++F L GLW+ELD Y+ +CT A + K I +R+ FL GL
Sbjct: 49 KQGSKKVTEFFTNLRGLWEELDQYRPMPQCTCPIQCTCLAVRNNKSFIAEDRIIKFLMGL 108
Query: 162 NNEYDQIRVQVLG*DPFPSLQQAYSFV 188
N +Y + QVL DP P + + +S V
Sbjct: 109 NEDYQGVTSQVLLMDPLPQINRVFSMV 135
>IMGA|Medtr1g137300.1 TIR-NBS-LRR type disease resistance protein,
related chr01_pseudomolecule_IMGAG_V3 30413365-30412803
H EGN_Mt090430 20090702
Length = 152
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 41 IEARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLINSMQPTISRGYLLLDTAKKIW 100
+E++ +LDG KP STDP F WK N ++S + ++ I + A +W
Sbjct: 17 LESKNKFVFLDGTIKKPDSTDPLFPTWKRCNDFVLSGVRATISSLIQESIEDITDASVLW 76
Query: 101 DAASHETKQGDLTIAQYFAKLSGLWQELDCYQDF---QAKCTDDATQVQKLIEVERVYDF 157
ET KL L EL ++ ++ C T + E E +Y F
Sbjct: 77 ----QET------------KLKNLLDELALFRPISRCRSTCYAYDTAIDHRSEDETLY-F 119
Query: 158 LAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ 189
L GLN+ + R ++LG DP P L +A+S ++
Sbjct: 120 LQGLNDNFAATRSEILGIDPIPVLDEAFSRIE 151
>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
EGN_Mt090430 20090702
Length = 532
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 333 WVIDSGANKHTTGSRKHFLTY-SKYQGTDKIRIADGSLVPIAGTGSI--DCTS--NIKLS 387
WV+DSGA +H R+ F +Y S D++ + D + G G + TS + LS
Sbjct: 312 WVVDSGATRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGKTLALS 371
Query: 388 HVLHVPRFPINLLSVSLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRDGLYLL 443
VL+VP NL+SV+L+ K + KV+F + + N +G+G GL++L
Sbjct: 372 DVLNVPTIRTNLISVALLNK-VGVKVSFESDKMVMSKNNV--FVGNGYCDQGLFVL 424
>IMGA|Medtr3g083290.1 Integrase, catalytic region, putative
chr03_pseudomolecule_IMGAG_V3 19547512-19547931 H
EGN_Mt090430 20090702
Length = 139
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 157 FLAGLNNEYDQIRVQVLG*DPFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSA-- 214
FL GLN+++ ++ QVL +P P L + YS V E+++ V S I + NSA
Sbjct: 17 FLTGLNDQFSIVQTQVLLMEPLPCLNRVYSLVIQEESKD---VFESVILMNPTLDNSADS 73
Query: 215 REYIQDAKNS-SSDKDQLFCDYCGKNRHTKEFCWKLHGRP 253
+++ K+S SS C +CG++ HT + C+K HG P
Sbjct: 74 KKFPGKGKSSFSSGYKSKLCTFCGRHGHTVDTCYKKHGFP 113
>IMGA|Medtr8g005190.1 Integrase, catalytic region, related
chr08_pseudomolecule_IMGAG_V3 117969-116692 E
EGN_Mt090430 20090702
Length = 237
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 124 LWQELD-------CYQDFQAKCTDDATQVQKLIEVERVYDFLAGLNNEYDQIRVQVLG*D 176
+W EL+ C C +T V+ E + FL GLN+ Y +R Q+L D
Sbjct: 4 IWDELEDLRPTPSCVCAIPCSC-KLSTSVRTYKNNEYILCFLKGLNDNYTNVRTQILLMD 62
Query: 177 PFPSLQQAYSFVQ*EKTRRNAMVHRSTIDKAGLISNSAREYIQD----AKNSSSDKDQLF 232
P PS+ + YS V + + S + S S+ ++ + K +
Sbjct: 63 PLPSISKTYSLVIQQDSTPTEQPSESNVFNVNSSSTSSAQHKGNHGLGRGRGKGPKTSML 122
Query: 233 CDYCGKNRHTKEFCWKLHGRPTKGRGGKRI 262
C C K HT E C+ HG P R ++
Sbjct: 123 CSNCNKTNHTVENCYFKHGFPPGYRSRNQL 152
>IMGA|Medtr4g114890.1 gag-pol polyprotein, related
chr04_pseudomolecule_IMGAG_V3 26420343-26419721 E
EGN_Mt090430 20090702
Length = 183
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 323 TFLAKIAKPSWVIDSGANKHTTGSRKHFLTYSKYQGTDKIRIADGSLVPIAGTGSIDCTS 382
TF K W+IDSG H T R F +K K+R+ +G+ + + G G++ S
Sbjct: 3 TFATKQPSKYWLIDSGCTHHMTHDRDLFKELNK-STISKVRMLNGAHIEVEGIGTVLVKS 61
Query: 383 N---IKLSHVLHVPRFPINLLSV-SLITKALNCKVTFYPTHCIF*ELNTGRMIGSGSLRD 438
+ ++S+VL+ P+ +LLSV L+TK KV F C+ + N ++ ++
Sbjct: 62 HSGYKQISNVLYAPKLNQSLLSVPQLLTKGY--KVLFEHEKCVIKDQNNKEVL-RAQMKA 118
Query: 439 GLYLLD 444
++LD
Sbjct: 119 RKFVLD 124