Jatropha Genome Database

JcCA0207121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0207121.10 + phase: 0 /pseudo
         (238 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g012270.1 defective in exine formation, putative chr0...   325   2e-89
IMGA|Medtr4g012280.1 DEX1, putative chr04_pseudomolecule_IMGAG_V...   320   3e-88

>IMGA|Medtr4g012270.1 defective in exine formation, putative
           chr04_pseudomolecule_IMGAG_V3 2058655-2062941 E
           EGN_Mt090430 20090702
          Length = 432

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 148/182 (81%), Positives = 169/182 (92%), Gaps = 4/182 (2%)

Query: 30  KKNKFREREASDDALGYPDIDEDALLNTQCPKNLELRWQTEVSSSIYASPLIADINSDGK 89
           K N FREREA+DDALGYP+IDEDAL+N++CP NLELRWQTEVSSS+YA+PLIADINSDGK
Sbjct: 31  KNNTFREREATDDALGYPEIDEDALVNSKCPMNLELRWQTEVSSSVYANPLIADINSDGK 90

Query: 90  LDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEV 149
           LDIVVPSFVHYLEVLEG+DGDKMPGWPAFHQSTVH+SPLLYDIDKDGVREIALATYNGEV
Sbjct: 91  LDIVVPSFVHYLEVLEGTDGDKMPGWPAFHQSTVHSSPLLYDIDKDGVREIALATYNGEV 150

Query: 150 LFFRVSGYMMTEKLVVPRRSVKKDWHVGLNPDPVDRSHPDVHDEQLISEAAGKKPVSHNM 209
           LFFRVSGY+M++KL VPRR V K+WHVGLN DPVDR+HPDVHD+QL+ EA     ++++M
Sbjct: 151 LFFRVSGYIMSDKLEVPRRKVLKNWHVGLNKDPVDRTHPDVHDDQLVQEAT----IANSM 206

Query: 210 AQ 211
           +Q
Sbjct: 207 SQ 208


>IMGA|Medtr4g012280.1 DEX1, putative chr04_pseudomolecule_IMGAG_V3
           2058655-2067111 E EGN_Mt090430 20090702
          Length = 873

 Score =  320 bits (821), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 152/192 (79%), Positives = 174/192 (90%), Gaps = 6/192 (3%)

Query: 22  NSVNGEE--TKKNKFREREASDDALGYPDIDEDALLNTQCPKNLELRWQTEVSSSIYASP 79
           +SV  EE   K N FREREA+DDALGYP+IDEDAL+N++CP NLELRWQTEVSSS+YA+P
Sbjct: 21  SSVFAEEDAKKNNTFREREATDDALGYPEIDEDALVNSKCPMNLELRWQTEVSSSVYANP 80

Query: 80  LIADINSDGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVRE 139
           LIADINSDGKLDIVVPSFVHYLEVLEG+DGDKMPGWPAFHQSTVH+SPLLYDIDKDGVRE
Sbjct: 81  LIADINSDGKLDIVVPSFVHYLEVLEGTDGDKMPGWPAFHQSTVHSSPLLYDIDKDGVRE 140

Query: 140 IALATYNGEVLFFRVSGYMMTEKLVVPRRSVKKDWHVGLNPDPVDRSHPDVHDEQLISEA 199
           IALATYNGEVLFFRVSGY+M++KL VPRR V K+WHVGLN DPVDR+HPDVHD+QL+ EA
Sbjct: 141 IALATYNGEVLFFRVSGYIMSDKLEVPRRKVLKNWHVGLNKDPVDRTHPDVHDDQLVQEA 200

Query: 200 AGKKPVSHNMAQ 211
                ++++M+Q
Sbjct: 201 T----IANSMSQ 208