Jatropha Genome Database

JcCA0205491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0205491.10 + phase: 2 /pseudo/partial
         (93 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g110810.1 hypothetical protein chr07_pseudomolecule_I...    89   6e-19

>IMGA|Medtr7g110810.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 25862843-25869117 E
           EGN_Mt090430 20090702
          Length = 442

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 56/81 (69%)

Query: 13  HDCRQDIANNLIERLSDEEIAIRHQASKLISMIDPSLVMPALVHLLYSSDEGLSYASTAF 72
           +   Q+ AN L+ERL D +I IR QASKL+  IDPSL +PALV L+YS DE  S AS A 
Sbjct: 360 YSAWQETANTLLERLGDNDIRIREQASKLLPKIDPSLYLPALVRLVYSPDENQSSASDAI 419

Query: 73  TAMLQYHNQKPEVICMLLDCL 93
             +L+ HNQ  E+I +++DCL
Sbjct: 420 VGVLKRHNQNIEIIFLVVDCL 440