Jatropha Genome Database

JcCA0200941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0200941.10 + phase: 0 /partial
         (135 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g133710.1 S-adenosylmethionine synthetase chr07_pseud...   269   3e-73
IMGA|Medtr8g134210.1 S-adenosylmethionine synthetase chr08_pseud...   266   2e-72

>IMGA|Medtr7g133710.1 S-adenosylmethionine synthetase
           chr07_pseudomolecule_IMGAG_V3 31361771-31364279 E
           EGN_Mt090430 20090702
          Length = 394

 Score =  269 bits (688), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 126/134 (94%), Positives = 130/134 (97%)

Query: 2   ETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNLVMVFGEITTKA 61
           ETFLFTSESVNEGHPDKLCDQISDAVLDACL QDPDSKVACETCTKTN+VMVFGEITTKA
Sbjct: 3   ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKA 62

Query: 62  NIDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAG 121
           N+DYEKIVRDTCR+IGF SDDVGLDAD CKVLVNIEQQSPDIAQGVHGH TKRPEE+GAG
Sbjct: 63  NVDYEKIVRDTCRTIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAG 122

Query: 122 DQGHMFGYATDETP 135
           DQGHMFGYATDETP
Sbjct: 123 DQGHMFGYATDETP 136


>IMGA|Medtr8g134210.1 S-adenosylmethionine synthetase
           chr08_pseudomolecule_IMGAG_V3 32232718-32230045 E
           EGN_Mt090430 20090702
          Length = 421

 Score =  266 bits (680), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/134 (94%), Positives = 129/134 (96%)

Query: 2   ETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNLVMVFGEITTKA 61
           ETFLFTSESVNEGHPDKLCDQISDAVLDACL QD DSKVACETCTKTNLVMVFGEITTKA
Sbjct: 32  ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDVDSKVACETCTKTNLVMVFGEITTKA 91

Query: 62  NIDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAG 121
            +DYEKIVRDTCR IGF SDDVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAG
Sbjct: 92  KVDYEKIVRDTCRKIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAG 151

Query: 122 DQGHMFGYATDETP 135
           DQGHMFGYATDETP
Sbjct: 152 DQGHMFGYATDETP 165