Jatropha Genome Database
- JcCA0192731.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0192731.20 + phase: 0 /partial
(209 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr3g144840.1 Cyclin-like F-box; chr03_pseudomolecule_IMG... 196 6e-51
IMGA|Medtr4g133940.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 62 2e-10
IMGA|Medtr8g119860.1 Cyclin-like F-box; chr08_pseudomolecule_IMG... 60 9e-10
IMGA|Medtr3g133280.1 Cyclin-like F-box; chr03_pseudomolecule_IMG... 54 7e-08
IMGA|Medtr2g008570.1 Cyclin-like F-box; chr02_pseudomolecule_IMG... 51 4e-07
>IMGA|Medtr3g144840.1 Cyclin-like F-box;
chr03_pseudomolecule_IMGAG_V3 37667380-37664948 E
EGN_Mt090430 20090702
Length = 356
Score = 196 bits (499), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 128/191 (67%), Gaps = 9/191 (4%)
Query: 15 LIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLCSQPFLYVSIR 74
LIPSLP+D+A+N LAR+PRSHH L+LVSKP S+ SS+LF+T RSL+ +Q LY+S+R
Sbjct: 9 LIPSLPDDVAINCLARVPRSHHTTLTLVSKPIHSLLSSSLFFTARSLIPSTQHILYLSLR 68
Query: 75 IPTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKIYVIGGCLKDIPS 134
+TS L +FTL N GSA + KIY+IGG + D+PS
Sbjct: 69 TRSTS-LQFFTLHNNH--------RLLPLPPLPSPTIGSAYAVIHHKIYLIGGSVNDVPS 119
Query: 135 SHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTWARSKNWAEVFDPKI 194
HVW LDCRFH W P+M ++REFAAAGV+DGKIYVIGGCV D ++RS NW+EVFDP
Sbjct: 120 RHVWILDCRFHRWLPGPSMRVAREFAAAGVIDGKIYVIGGCVPDNFSRSANWSEVFDPVN 179
Query: 195 RTWESVDSARE 205
WESV S E
Sbjct: 180 NRWESVPSPPE 190
>IMGA|Medtr4g133940.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 32194624-32189765 E
EGN_Mt090430 20090702
Length = 437
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Query: 13 PILIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLCSQPFLYVS 72
P L+P LP+D+A+ L R+PR H L LV K + + S FY+ R L ++ ++YV
Sbjct: 75 PPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLSGNFFYSLRKSLGMAEEWVYVI 134
Query: 73 IRIPTTS-SLHWF----TLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKIYVIGG 127
R SLH F ++Q+ P G A+++ G +Y+ GG
Sbjct: 135 KRDREGKISLHAFDPIYQIWQSLP--------PVPGEYSEALGFGCAVLS-GCHLYLFGG 185
Query: 128 C--LKDIPSSHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTWARSKN 185
LK V + R + W P+M R + V++ +YV GG R+
Sbjct: 186 RDPLKG-SMRRVIFYNARTNKWHRAPDMLRKRHLFGSCVMNNCLYVAGG-ECKGIQRTLR 243
Query: 186 WAEVFDPKIRTW 197
AEV+DP W
Sbjct: 244 SAEVYDPNRNRW 255
>IMGA|Medtr8g119860.1 Cyclin-like F-box;
chr08_pseudomolecule_IMGAG_V3 27289161-27291907 E
EGN_Mt090430 20090702
Length = 428
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 11/198 (5%)
Query: 3 ATTSASQEPAPILIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLL 62
A S+ +P+L P LP+D+A+ L R+PR H L LV K + + FY+ R L
Sbjct: 56 ARGDRSRNQSPLL-PGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLIGNFFYSLRKSL 114
Query: 63 LCSQPFLYVSIRIPTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKI 122
++ ++YV I+ + W P V G +
Sbjct: 115 RLAEEWIYV-IKRDRDGKISWHAF---DPVYQQWQPLPPVPKEYSGALGFGCAVLNGCHL 170
Query: 123 YVIGGCLKD-IPSS--HVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDT 179
Y+ GG KD + S V R + W P+M R F + V++ +YV GG +
Sbjct: 171 YLFGG--KDPLKGSMRRVIFYSTRTNKWHRAPDMLRRRHFFGSCVINNCLYVAGG-ENEG 227
Query: 180 WARSKNWAEVFDPKIRTW 197
RS AEV+DP W
Sbjct: 228 VHRSLRSAEVYDPNKNRW 245
>IMGA|Medtr3g133280.1 Cyclin-like F-box;
chr03_pseudomolecule_IMGAG_V3 33747469-33746429 E
EGN_Mt090430 20090702
Length = 346
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 15 LIPSLPNDIALNILARLPRSHHPLLSLVSKPF-RSVFSSALFYTTRSLLLCSQPFLYVSI 73
LIP LPN+IA L +P + PL+ VS + R++ + F ++ S P L+V
Sbjct: 17 LIPGLPNEIAEICLLHVPYPYQPLVRSVSSSWNRAITNPPSFLLSKKTKTLSHPHLFVLA 76
Query: 74 RIPTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKIYVIGGCLKDIP 133
TS + W +L P+ ++L G KI+ IGG
Sbjct: 77 VNTVTSKIQWQSL---DPSSNRWFMLPSMPLVCPTAFASASLPHNG-KIFFIGG-----K 127
Query: 134 SSHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIG--GCVV-----DTWARSKNW 186
SS + W + P M + F+AA V GKI +G G + DTW R
Sbjct: 128 SSSTLVYRTAVNKWSTVPEMITGKSFSAAEEVKGKIVTVGESGTGIYDPESDTWKRGAQ- 186
Query: 187 AEVFDPKIRTWESV 200
F ++R +E+V
Sbjct: 187 ---FTGELRRYETV 197
>IMGA|Medtr2g008570.1 Cyclin-like F-box;
chr02_pseudomolecule_IMGAG_V3 1657223-1654852 E
EGN_Mt090430 20090702
Length = 476
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 15 LIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLCSQPFLYVSIR 74
LIPSLP++I+ ILAR+PR H+ L VS+ +++ +S+ + R L ++ +LY+ +
Sbjct: 43 LIPSLPDEISAQILARVPRIHYLNLKSVSRAWKAALASSELFCLRKELGTTEEWLYILTK 102
Query: 75 IPTTSSLHWFTL 86
+ + L W+ L
Sbjct: 103 V-NDNKLLWYAL 113