Jatropha Genome Database

JcCA0192231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0192231.10 + phase: 0 /partial/short
         (45 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g072790.1 Protein phosphatase 2C-like; chr05_pseudomo...    47   2e-06
IMGA|Medtr2g008900.1 Protein phosphatase 2C-like; chr02_pseudomo...    47   2e-06
IMGA|Medtr5g072790.2 Protein phosphatase 2C-like; chr05_pseudomo...    47   3e-06

>IMGA|Medtr5g072790.1 Protein phosphatase 2C-like;
           chr05_pseudomolecule_IMGAG_V3 25998361-26002733 E
           EGN_Mt090430 20090702
          Length = 282

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ + +KDP              +SKDDISC+V+RF
Sbjct: 238 VMANQEAVDIARKVKDPLKAAKQLTAEALKRESKDDISCVVVRF 281


>IMGA|Medtr2g008900.1 Protein phosphatase 2C-like;
           chr02_pseudomolecule_IMGAG_V3 1842008-1845587 E
           EGN_Mt090430 20090702
          Length = 281

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+   IKDPQ             +S+DDISCIV+RF
Sbjct: 237 VMANQEAVDIALKIKDPQKAAKQLIAEALKRESRDDISCIVVRF 280


>IMGA|Medtr5g072790.2 Protein phosphatase 2C-like;
           chr05_pseudomolecule_IMGAG_V3 25998361-26002733 E
           EGN_Mt090430 20090702
          Length = 235

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ + +KDP              +SKDDISC+V+RF
Sbjct: 191 VMANQEAVDIARKVKDPLKAAKQLTAEALKRESKDDISCVVVRF 234