Jatropha Genome Database

JcCA0172201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0172201.10 - phase: 0 /partial
         (163 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g104640.1 Enolase chr05_pseudomolecule_IMGAG_V3 41981...   172   5e-44
IMGA|Medtr6g069700.1 Enolase chr06_pseudomolecule_IMGAG_V3 12938...   162   8e-41

>IMGA|Medtr5g104640.1 Enolase chr05_pseudomolecule_IMGAG_V3
           41981079-41989044 E EGN_Mt090430 20090702
          Length = 415

 Score =  172 bits (437), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 107/152 (70%), Gaps = 6/152 (3%)

Query: 10  QDDVDAIMLDIDGTPNKSKLGANAILGVSLSICRAGAGAKGLPLYKHIQELSGTKELVMP 69
           Q  +D  M+D+D T  K +LGANAIL VS++ C+AGA  K +PLYKHI +LSG    V+P
Sbjct: 59  QSQIDHAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLSGKTNPVLP 118

Query: 70  VPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQDACN 129
           VPAF VI+GG HAGNNLA++E MILP+GA+ F EALRMGSE YH LK +I  K G   CN
Sbjct: 119 VPAFTVISGGKHAGNNLAIEEIMILPIGASRFDEALRMGSETYHHLKAVITEKCGPHNCN 178

Query: 130 VGDEGGFAPNVQDNRGGTCFAHRRNREGWLHW 161
           VG++GGFAPNV  +R      H     G++H+
Sbjct: 179 VGEDGGFAPNV--SRQAFYLKHS----GFVHF 204


>IMGA|Medtr6g069700.1 Enolase chr06_pseudomolecule_IMGAG_V3
           12938141-12943135 E EGN_Mt090430 20090702
          Length = 434

 Score =  162 bits (410), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 85/143 (59%), Positives = 100/143 (69%), Gaps = 23/143 (16%)

Query: 10  QDDVDAIMLD-IDGTPN-----KSKLGANAILGVSLSICRAGAGAKGLPLYKHIQELSGT 63
           Q ++D  M+  +DGT N     K KLGANAIL VSL++C+AGA AK +PLYKHI  L+G 
Sbjct: 92  QTEIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGALAKKIPLYKHIANLAGN 151

Query: 64  KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKY 123
           K LV+PVP+FNVINGGSHAGN LAMQ                 MG EVYH LK +IK KY
Sbjct: 152 KTLVLPVPSFNVINGGSHAGNKLAMQ-----------------MGVEVYHYLKAVIKKKY 194

Query: 124 GQDACNVGDEGGFAPNVQDNRGG 146
           GQDA NVGDEGGFAPN+Q+N+ G
Sbjct: 195 GQDATNVGDEGGFAPNIQENKEG 217