Jatropha Genome Database
- JcCA0163731.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0163731.20 - phase: 2 /TE/partial
(608 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 294 7e-80
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 291 5e-79
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 286 1e-77
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 286 2e-77
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 234 1e-61
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 227 1e-59
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 176 2e-44
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 169 4e-42
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 159 5e-39
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 152 3e-37
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 99 4e-21
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 77 3e-14
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 73 5e-13
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 70 4e-12
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 67 4e-11
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 59 7e-09
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 58 2e-08
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 57 4e-08
IMGA|Medtr5g086560.1 Immunoglobulin/major histocompatibility com... 55 7e-08
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 55 1e-07
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 54 3e-07
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 294 bits (753), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 154/304 (50%), Positives = 201/304 (66%), Gaps = 3/304 (0%)
Query: 254 NQICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDD 313
N +CK KSLYGLKQASR+W KL+ +L+ + YTQ+ SDHSL T S+T LL+YVDD
Sbjct: 1003 NTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDD 1062
Query: 314 VILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAET 373
+IL G+ L + Q +K +LD LFKIKDLG L+FFL LE+A S GI+LCQ+KY L+LLA++
Sbjct: 1063 IILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGLEVAHSQLGISLCQKKYCLDLLADS 1122
Query: 374 SFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLSQIL 433
+ SKP STP D ++KL P DI SYR+LIG+L++L TTRPD+T + QLSQ L
Sbjct: 1123 GTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLIGRLLYLNTTRPDITYITQQLSQFL 1182
Query: 434 SASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRRMVIGYGVY 493
SA T H A VLRY+K PG GL FP +QL+ +S+++ A CLDTRR + G +
Sbjct: 1183 SAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFF 1242
Query: 494 LGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKI---DHPQLFTNAR 550
LG+SL EAEYRAL + TCE+QWL YLL DL + P LF + +
Sbjct: 1243 LGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQ 1302
Query: 551 NTLN 554
+ L+
Sbjct: 1303 SALH 1306
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 58 LPSRPQRIRRAPXYLKDYHCNLIATDSSLNNSIKHPLSAVISYQHTSPSYFHLISNSTSV 117
LP R + +P YL+DY CN I NS +P+S +S+ S + + + +
Sbjct: 812 LPRHSTRNKISPSYLQDYVCNSI-------NSTTYPISHYLSHNKLSSHHSSYVLSLHTH 864
Query: 118 FETKSYXEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
E K+Y EA KH+ W+ AM EL+AL +T TW V LP
Sbjct: 865 NEPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLP 902
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 291 bits (746), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 189/288 (65%)
Query: 253 PNQICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVD 312
P+Q+CK +KSLYGLKQASRQW KL+ VLI Y Q+ SDHSL SFT LL+YVD
Sbjct: 874 PHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTILLVYVD 933
Query: 313 DVILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAE 372
D+IL G LL+ Q +K +LD FKIKDLG L++FL +E+A S GI+L QRKY L+LL +
Sbjct: 934 DIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAHSKLGISLYQRKYCLDLLHD 993
Query: 373 TSFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLSQI 432
+ + SKP STP D + KL T TP DI +YR+L+G+L++L TRPD+T + QLSQ
Sbjct: 994 SGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLVGRLLYLNNTRPDITFITQQLSQF 1053
Query: 433 LSASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRRMVIGYGV 492
LS T AH A LRY+K PG GL FP + L+ FS+++ A CLDTR+ V G
Sbjct: 1054 LSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDADWAGCLDTRKSVTGQCF 1113
Query: 493 YLGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKI 540
+LG+SL EAEYRAL + TCEIQWL YLLNDL I
Sbjct: 1114 FLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLYLLNDLHI 1161
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 59 PSRPQRIRRAPXYLKDYHCNLIATDSSLNNSIKHPLSAVISYQHTSPSYFHLISNSTSVF 118
P R R+R AP +L+DY CN + +S +PLS I+Y + S ++ IS+ +
Sbjct: 685 PRRSNRVRTAPLHLQDYVCNSV-------HSTTYPLSHYINYNNISTNHASFISSLQTTP 737
Query: 119 ETKSYXEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
E +Y EA KH W AM AEL AL KT TW +V LP
Sbjct: 738 EPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLP 774
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 191/292 (65%)
Query: 254 NQICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDD 313
NQ+CK KSLYGLKQASR+W KL+ VL YTQ+ SD+SL SFT LL+YVDD
Sbjct: 1029 NQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDYSLFVKKTSTSFTVLLVYVDD 1088
Query: 314 VILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAET 373
+IL GN + + +K +LD LFKIKDLG L++FL +E+A S GI+LCQRKY L+LLA+
Sbjct: 1089 IILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADI 1148
Query: 374 SFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLSQIL 433
L SKP STP DS++KL + +P D+ + R+L+G+L++L TRPD+T + QLSQ L
Sbjct: 1149 GSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRRLVGRLLYLNNTRPDITFITQQLSQFL 1208
Query: 434 SASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRRMVIGYGVY 493
S T AH A VL+Y+K PG GL FP + L+ FS+++ A C+DTRR + G +
Sbjct: 1209 SQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFF 1268
Query: 494 LGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKIDHPQL 545
LG+SL EAEYRAL + TCE+QW+ YLL DL P+L
Sbjct: 1269 LGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILYLLKDLHTTCPKL 1320
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 58 LPSRPQRIRRAPXYLKDYHCNLIATDSSLNNSIKHPLSAVISYQHTSPSYFHLISNSTSV 117
+P R AP YL+DY CN I ++ +P++ +S+ H S S + + +
Sbjct: 838 VPRHSTRNVTAPSYLQDYICNNI-------HAFTYPITHSLSHHHLSNSRSFFVMSLHTQ 890
Query: 118 FETKSYXEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
E KSY EA K W+ AM EL+AL KT TW LV LP
Sbjct: 891 PEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLP 928
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/287 (50%), Positives = 189/287 (65%)
Query: 254 NQICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDD 313
NQ+CK KSLYGLKQASR+W KL+ +L+ + Y QS SDHSL + SFT LL+YVDD
Sbjct: 1020 NQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSDHSLFIKKTYTSFTALLVYVDD 1079
Query: 314 VILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAET 373
VI+ G L + Q +K +L +IKDLG L++FL LE+A S QGI+LCQRKY L+LL +
Sbjct: 1080 VIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVAHSSQGISLCQRKYCLDLLTDI 1139
Query: 374 SFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLSQIL 433
FLA+KP STP D + KL A G P DI SYR+LIG+LI+LT TRP +T QLSQ L
Sbjct: 1140 GFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLIGRLIYLTNTRPYITFATQQLSQFL 1199
Query: 434 SASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRRMVIGYGVY 493
++ T H +A +LRY+K++PG GL FP + L +S+++ A CLD+RR + G +
Sbjct: 1200 NSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGYSDADWAGCLDSRRSISGQCFF 1259
Query: 494 LGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKI 540
LG SL EAEYRAL TCE+QWL YLL+DL +
Sbjct: 1260 LGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLLYLLHDLHV 1306
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 56 SPLPSRP-----QRIRRAPXYLKDYHCNLIATDSSLNNSIKHPLSAVISYQHTSPSYFHL 110
SP+P P RI + P +L+DY C+ ++ D+S +++P+S +SY + S S+
Sbjct: 819 SPIPQPPVIRKSSRITQPPTHLQDYVCS-VSDDTSF---VQYPISHYLSYNNLSSSHCAF 874
Query: 111 ISNSTSVFETKSYXEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
+ S E +Y EA K W+ AM EL AL T TW LV LP
Sbjct: 875 ALSLDSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLP 919
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 163/258 (63%), Gaps = 3/258 (1%)
Query: 297 TLHKFHSFTTLLIYVDDVILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQ 356
T H SFT LL+YVDD+IL GN L + Q +K +L FKIKDLG L++ L LE+A S Q
Sbjct: 3 TKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHSKQ 62
Query: 357 GITLCQRKYALELLAETSFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLT 416
GI+LCQRKY L+LL+++ + SKP ST D+++KL + P DI SYR+LIG+L++L
Sbjct: 63 GISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLYLN 122
Query: 417 TTRPDLTSVVNQLSQILSASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSN 476
+TRPD+T + QLSQ LS T H A VL+Y+K PG GL FP + L+ FS+ +
Sbjct: 123 STRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSDVD 182
Query: 477 GARCLDTRRMVIGYGVYLGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLN 536
A C+D+RR + G ++G+SL EAEYRAL + TCE+QW+ YLL
Sbjct: 183 WAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWILYLLK 242
Query: 537 DLKIDH---PQLFTNARN 551
DL I P LF + +N
Sbjct: 243 DLNIQSSKLPVLFCDNQN 260
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/261 (46%), Positives = 164/261 (62%), Gaps = 2/261 (0%)
Query: 266 LKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDDVILVGNDLLKIQ 325
++ ASR+W KL+ +L+ +GY Q+ +DHSL H FT LL+YVDD+IL GN L +
Sbjct: 382 IRLASRKWYEKLASLLVNHGYKQASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFT 441
Query: 326 RVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAETSFLASKPCSTPI 385
+K +L FKIKDLG L++FL LE+A S GI+LCQRKY L+LL++T L SKP +TP
Sbjct: 442 FIKNILHNSFKIKDLGQLKYFLGLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPS 501
Query: 386 DSNVKLSATTGTPLF-DISSYRKLIGKLIHLTTTRPDLTSVVNQLSQILSASTSAHQLAL 444
D ++KL +PL+ DI +YR+L+G+L++L TRPD+T + QLSQ LS T H A
Sbjct: 502 DPSIKL-YHDDSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAA 560
Query: 445 HIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRRMVIGYGVYLGDSLXXXXXX 504
VLRY+K PG GL FP ++ +S+++ A C DTRR + G +LGDSL
Sbjct: 561 LRVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTK 620
Query: 505 XXXXXXXXXXEAEYRALTTTT 525
EAEYRAL T
Sbjct: 621 KQLTVSRSSSEAEYRALGAAT 641
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 59 PSRPQRIR------RAPXYLKDYHCNLIATDSSLNNSIKHPLSAVISYQHTSPSYFHLIS 112
PSRP IR +P YLKDY C + +S+NN + +S +SY + S + H I
Sbjct: 228 PSRPPPIRCSSRNKISPSYLKDYICPH-KSSTSVNN--LYSISNYVSYHNISNPHSHFIL 284
Query: 113 NSTSVFETKSYXEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
+ + E K+Y EA K + WR AM EL AL T TW ++ P
Sbjct: 285 SLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSP 327
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 119/172 (69%)
Query: 254 NQICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDD 313
+++CK KSLYGL+QAS +W KL+ +LI GY Q+ SD SL H SFT LL+YVDD
Sbjct: 121 DEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVDD 180
Query: 314 VILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAET 373
VIL G+ L + +K +L FKIKD+G L++FL LE+A S GI+LCQRKY L+LL ++
Sbjct: 181 VILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLEDS 240
Query: 374 SFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSV 425
SKP +TP D ++KL + DI +YR+LIG+L++L TTRPD+T +
Sbjct: 241 GLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDITYI 292
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 122/205 (59%)
Query: 256 ICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDDVI 315
+CK KSLYGLKQASRQW KL++ L GY SP D+SL + S L +YVDD++
Sbjct: 474 VCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVFLGVYVDDIL 533
Query: 316 LVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAETSF 375
L G D +I +K LD FKIKDLG L +FL LE+ GI + QRK+ L+LL E +
Sbjct: 534 LTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKDDGILVSQRKFVLDLLKEFNC 593
Query: 376 LASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLSQILSA 435
P S+P+D N+KL + G L D + YRKLIGKL LT TR DL V LSQ +
Sbjct: 594 DHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRKLIGKLNFLTHTRLDLAYGVQLLSQYMQD 653
Query: 436 STSAHQLALHIVLRYIKQAPGLGLL 460
H A +LRY+K+ P LG+
Sbjct: 654 PREPHLHAAFHMLRYLKKDPTLGVF 678
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 57 PLPSRPQRIRRAPXYLKDYHCNLIATDSSLNNSIKH-----PLSAVISYQH-TSPSYFHL 110
P R QR+ + P YL DY N+ + S+++NS PL+A+ + +H SP F
Sbjct: 264 PQLRRSQRLHKTPTYLTDYVHNVPS--STVSNSQPPQPHSLPLNALFTLKHYVSPDVFSF 321
Query: 111 -----ISNSTSVFETKSYXEAVKHQVWRDAMSAELEALNKTQTWTLVTLPLEKLQXATSG 165
I N + E SY EA W+ AM+ E AL+ TWTL LP +K + G
Sbjct: 322 DSQSFIMNISHDCEPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDK---KSVG 378
Query: 166 C 166
C
Sbjct: 379 C 379
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 127/234 (54%), Gaps = 14/234 (5%)
Query: 307 LLIYVDDVILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYA 366
+LIYVDD+++ GND I K L F +KDLGPL++FL LE+A+ G+ +CQRKY
Sbjct: 3 VLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRKYT 62
Query: 367 LELLAETSFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVV 426
L++L E L KP + P++ N KL G D S YR+LI +LI+LT P++T
Sbjct: 63 LDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEIT--- 119
Query: 427 NQLSQILSASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRRM 486
S H L + VLRY+K +PG G++ P +QL A+ +S+ A C TRR
Sbjct: 120 ----------YSVHILTMR-VLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRS 168
Query: 487 VIGYGVYLGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKI 540
GY + LG + EAEYRA+ E+ WL LL+ L++
Sbjct: 169 TSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQV 222
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 120/233 (51%), Gaps = 40/233 (17%)
Query: 253 PNQICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVD 312
P Q+CK KSLYGLKQASR+W KL +L+ G+ Q+ +DHS SFT LLIYV
Sbjct: 231 PGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASADHSFLIRASPTSFTALLIYV- 289
Query: 313 DVILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAE 372
A S +GI+LCQRKY L+LL++
Sbjct: 290 ---------------------------------------AHSSKGISLCQRKYCLDLLSD 310
Query: 373 TSFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLSQI 432
K STP+D L G P D+ +YR LIG L++LTTTRPD++ QLSQ
Sbjct: 311 AGLTTCKSVSTPLDYACLLHIDDGPPFDDVLAYRCLIGCLLYLTTTRPDISFATQQLSQF 370
Query: 433 LSASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRR 485
++ + H VLRY++ PG GL FP +QL FS+++ C+D+RR
Sbjct: 371 MAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLLGFSDADWGGCVDSRR 423
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 64 RIRRAPXYLKDYHCNLIATDSSLNNSIKHPLSAVISYQHTSPSYFHLISNSTSVFETKSY 123
R R P +L+D+ C+ + P+SA +SY SPSY +S E S+
Sbjct: 109 RTRTTPAHLQDFVCSAL------------PISASLSYHPLSPSYCSFTLAISSDIEPSSF 156
Query: 124 XEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
+A W+ AMS EL AL T TW V P
Sbjct: 157 KQAQSDPRWQLAMSPELSALEATGTWIFVDPP 188
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 99.4 bits (246), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/99 (51%), Positives = 66/99 (66%)
Query: 260 QKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDDVILVGN 319
+KSLYGLKQASR W KLSQ LI G+ +S +DHSL T + F +LIYVDD+++ GN
Sbjct: 6 RKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLVIAGN 65
Query: 320 DLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGI 358
D I K L F +KDLGPL++FL LE+A+ G+
Sbjct: 66 DTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGL 104
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 307 LLIYVDDVILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIA-QSPQGITLCQRKY 365
+++YV D+I+ GN+ +Q++ L+ F +KDLG L++FL +E+ QS + + Q KY
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKY 60
Query: 366 ALELLAETSFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSV 425
+LLA+T +K +P+ S++KLS TP D + R ++ L + P
Sbjct: 61 VRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP----- 115
Query: 426 VNQLSQILSASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRR 485
L VLR++K GLL L + + D
Sbjct: 116 ------------------LSNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADWGSDPDD 157
Query: 486 MVIGYGVYLGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKIDHPQL 545
+ V+LG +L EAEY +L E+ W+ LK+ +L
Sbjct: 158 RSVDACVFLGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKTYGARLKVIQKKL 217
Query: 546 FTN 548
F +
Sbjct: 218 FVS 220
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 68/117 (58%)
Query: 314 VILVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAET 373
+I+ G+D + I+ +K L F++KDL PL +FL LE S + L Q KYA +L+++
Sbjct: 1 MIISGDDSIGIEELKQFLCHHFEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQA 60
Query: 374 SFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLS 430
K T ++ N++ + GT L D + Y +G LI+LT TRP+++ V+ +S
Sbjct: 61 GLTDCKIEYTRLEPNIQFTPQDGTLLDDATLYWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 55 PSPLPSR-PQRIRRAPXYLKDYHCNLIATDSSLNNSIKHPLSAVISYQHTSPSYFHLISN 113
P PLP+R R + P YLKD+ C A SS + + H +S +SY + S S+ H I +
Sbjct: 849 PPPLPTRHSSRNKTPPSYLKDFIC---ANKSSASVNSLHSISNFVSYHNISNSHSHFILS 905
Query: 114 STSVFETKSYXEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
+ E KSY EA K + WR AM EL AL T TW ++ LP
Sbjct: 906 LHAHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLP 947
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 17/96 (17%)
Query: 447 VLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGA-RCLDTRRMVIGYGVYLGDSLXXXXXXX 505
VL Y+K PG GL FP +Q++ ++N++ A C DTRR + + S
Sbjct: 3 VLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCFFCWSS-------- 54
Query: 506 XXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKID 541
EAEYRAL + TCE+Q L+YLL DLK++
Sbjct: 55 --------SEAEYRALASATCELQRLTYLLRDLKVN 82
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 253 PNQICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVD 312
PNQ+CK +KSLYGLKQA + W L + L+ + + SD SL K ++F L+YVD
Sbjct: 13 PNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVKANTFAYFLVYVD 72
Query: 313 DVIL 316
D+ L
Sbjct: 73 DIPL 76
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 39/207 (18%)
Query: 256 ICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDDVI 315
+ K K+LYGLKQA R W ++ + + G+ + ++H + K T+LLI
Sbjct: 265 VFKLNKALYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYV--KGSEGTSLLI------ 316
Query: 316 LVGNDLLKIQRVKXLLDGLFKIKDLGPLRFFLVLEIAQSPQGITLCQRKYALELLAETSF 375
+ LEI ++ +G+ L Q KY E+ + +
Sbjct: 317 -------------------------------ICLEILRTTKGLILNQTKYDTEIQKKFNM 345
Query: 376 LASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLSQILSA 435
L T +N D + R+LIG L +L +R D++ V +S+ +S
Sbjct: 346 LDFNSSITLAYANNINEVKEEDKGVDPTILRRLIGLLRYLCQSRLDISYSVGIVSKFMSN 405
Query: 436 STSAHQLALHIVLRYIKQAPGLGLLFP 462
H LA ++RYI G+LFP
Sbjct: 406 PLKTHFLAAKKIIRYIHGTLQYGILFP 432
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 64 RIRRAPXYLKDYHCNL-IATDSSLNNSIKHPLSAVISYQHTSPSYFHLISNSTSVFETKS 122
R P +L+DY CN A+ S N+ + HP+S SY + S S+ + S E +
Sbjct: 842 RNTHPPTHLQDYVCNTSTASVLSDNSFVHHPISHYYSYNNLSSSHCAFAMSLDSHTEPTT 901
Query: 123 YXEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
Y EA K W AM EL AL T TW LV LP
Sbjct: 902 YAEASKFDCWNQAMKVELSALENTGTWRLVDLP 934
>IMGA|Medtr5g086560.1 Immunoglobulin/major histocompatibility
complex chr05_pseudomolecule_IMGAG_V3 33219418-33218915
H EGN_Mt090430 20090702
Length = 167
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 62 PQRIRRAPXYLKDYHCNL-------IATDSSLNNSIKHPLSAVIS---YQHTSPSYFHLI 111
P R R+ P YL DY+C+ +A S ++ +P++ I+ Y +Y I
Sbjct: 42 PPRTRKPPAYLGDYYCHAAHKNPMSMAPTHSHSSGKVYPITNFINNDCYSRRHQAYLASI 101
Query: 112 SNSTSVFETKSYXEAVKHQVWRDAMSAELEALNKTQTWTLVTLPLE 157
N+ E +SY EA+K W+ AM+ EL+AL + TW L TLP E
Sbjct: 102 HNNE---EPQSYQEAMKKPEWQKAMTVELKALEENGTWDL-TLPPE 143
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 64 RIRRAPXYLKDYHCNLIATDSSLNNSIKHPLSAVISYQHTSPSYFHLISNSTSVFETKSY 123
R + +P YLKDY C + +S+NN + +S +SY + S + H I + + E K+Y
Sbjct: 332 RNKISPSYLKDYICPH-KSSTSVNN--LYSISNYVSYHNISNPHSHFILSLHAHNEPKTY 388
Query: 124 XEAVKHQVWRDAMSAELEALNKTQTWTLVTLP 155
EA K + WR AM EL AL T TW ++ P
Sbjct: 389 TEANKFECWRQAMQVELTALENTGTWKIIDSP 420
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%)
Query: 349 LEIAQSPQGITLCQRKYALELLAETSFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKL 408
+EI + +G+ L Q YA E+L + + L T D+N+ D + +R+L
Sbjct: 1 MEILINSKGLILHQTDYASEILKKFNMLDCNSTITHADANIIYEVKEEDEGVDPTMFRRL 60
Query: 409 IGKLIHLTTTRPDLTSVVNQLSQILSASTSAHQLALHIVLRYIKQAPGLGLLF 461
IG L +L +RP ++ +V +S+ +S + L+ +LRYI G+LF
Sbjct: 61 IGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILF 113