Jatropha Genome Database

JcCA0155261.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155261.30 + phase: 0 /pseudo/partial
         (254 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g140330.1 Polynucleotidyl transferase, Ribonuclease H...   119   1e-27

>IMGA|Medtr4g140330.1 Polynucleotidyl transferase, Ribonuclease H
          fold chr04_pseudomolecule_IMGAG_V3 34370660-34372142 H
          EGN_Mt090430 20090702
          Length = 281

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 65/78 (83%)

Query: 9  ATEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSSR 68
          A EIVFFDLET VP +IGQ+FWVLEFGAI+V   KL E+ES++TLIRP+DLSV  +KSSR
Sbjct: 14 APEIVFFDLETNVPKKIGQRFWVLEFGAIVVSAHKLSEIESYTTLIRPEDLSVAPMKSSR 73

Query: 69 SDGITREAVANAPILKKL 86
          SDGITREAV NAP  + +
Sbjct: 74 SDGITREAVKNAPCFEDV 91



 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 186 TRSRSNGKLQCGEESSRKSPPSTIGYQRTVPYTRGSLGKVTEGVKNLFCKAQETKSINKL 245
           TRSR+NGK  C EE+SRKSPP++  YQRTVPY RGSLGKV E +K L CKAQ    + +L
Sbjct: 213 TRSRTNGKSPCREETSRKSPPASSSYQRTVPYARGSLGKVAERMKGLLCKAQGQPPLQQL 272

Query: 246 IKHSHSLLR 254
           +KHSHSLLR
Sbjct: 273 LKHSHSLLR 281