Jatropha Genome Database

JcCA0155261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155261.10 + phase: 0 
         (371 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g101140.1 Tetratricopeptide-like helical chr03_pseudo...   513   e-146

>IMGA|Medtr3g101140.1 Tetratricopeptide-like helical
           chr03_pseudomolecule_IMGAG_V3 24447594-24448919 E
           EGN_Mt090430 20090702
          Length = 359

 Score =  513 bits (1322), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/372 (68%), Positives = 301/372 (80%), Gaps = 16/372 (4%)

Query: 1   MDADTTDTQPEPVSLSSDPLSNQFGSLNDLAHELASLQDLANRGSWRSILDKVARARSLA 60
           M++D+  ++ +     +DPL N    L++L H+L SLQDLANRG+WRSI+DKVARAR+L+
Sbjct: 1   MESDSPRSETQ-----TDPLIN---PLDELCHDLHSLQDLANRGAWRSIIDKVARARALS 52

Query: 61  LLTTPHDHLTYLAYNVLAFVKLRRFKDALTELDSVDDFDSHHYRYETYPKIYPHRHGSMV 120
           LL  PHDHLTYLA+N LAF KLRRF +A +ELDSV+D DS HYRYETYPK+YP+R GSMV
Sbjct: 53  LLQKPHDHLTYLAFNALAFTKLRRFNEASSELDSVEDLDSSHYRYETYPKVYPNRVGSMV 112

Query: 121 PFSLRWLHAVIPLKLGNRQEGLDRFYILLDFVRGKL--KEKQGFDFSSKIWRNREVFVMN 178
           PFSLRWLHA+IP+KLG RQ+G+DR Y LLDFVR K+  KE      S ++WR REVFV+N
Sbjct: 113 PFSLRWLHALIPIKLGQRQQGIDRLYNLLDFVREKIRIKEDDNLSASVRVWRKREVFVVN 172

Query: 179 WIISEHLKNKEFTICLDLIKDLVSRGNFDPVLLSKLGCIQMQIGDLEGAKGSFEKVEKLL 238
            II  HL +KEF +CL LIK L+SR   DP L+S+LG IQ+Q GDLEGAK SF K E   
Sbjct: 173 CIIGHHLSHKEFGVCLSLIKTLISRDPEDPFLISQLGYIQLQTGDLEGAKDSFLKAEG-- 230

Query: 239 EERIAGGSDESLSEVEFRNLVNRNKALVYLVGKDYVSAVREYEECIDRDPMDVVAINNKA 298
                G +  SLSEVEF+NL NRNKAL+Y+VGKDYVSAVREY+ CI+RD  D+VA NNKA
Sbjct: 231 ----DGKNHGSLSEVEFKNLANRNKALIYMVGKDYVSAVREYDVCIERDHSDIVAFNNKA 286

Query: 299 LCLMYLRDLSDSIKVLENSLERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWIAR 358
           LCLMYLRDLSDSIKVLEN+LERVPTVALNET+VVNLCSMYELAYVNHSDIKRTLS+WIAR
Sbjct: 287 LCLMYLRDLSDSIKVLENALERVPTVALNETIVVNLCSMYELAYVNHSDIKRTLSSWIAR 346

Query: 359 VAPDDFDSSSTR 370
           VAPDDFDS+ TR
Sbjct: 347 VAPDDFDSTCTR 358