Jatropha Genome Database
- JcCA0155101.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0155101.20 - phase: 0
(153 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr6g020290.1 Ribulose bisphosphate carboxylase, small ch... 272 5e-74
IMGA|Medtr6g020290.2 Ribulose bisphosphate carboxylase, small ch... 271 1e-73
IMGA|Medtr6g020280.1 Ribulose bisphosphate carboxylase, small ch... 271 1e-73
IMGA|AC233685_63.3 Ribulose bisphosphate carboxylase, small chai... 249 4e-67
IMGA|AC233685_63.1 Ribulose bisphosphate carboxylase, small chai... 249 4e-67
IMGA|AC233109_18.1 Ribulose bisphosphate carboxylase, small chai... 248 1e-66
IMGA|Medtr8g129230.1 Ribulose bisphosphate carboxylase, small ch... 173 3e-44
IMGA|AC233685_63.2 Ribulose bisphosphate carboxylase, small chai... 121 2e-28
IMGA|AC233109_2.1 Ribulose bisphosphate carboxylase, small chain... 121 2e-28
IMGA|AC233109_9.1 Ribulose bisphosphate carboxylase, small chain... 120 4e-28
IMGA|Medtr8g129230.3 Ribulose bisphosphate carboxylase, small ch... 115 7e-27
IMGA|Medtr3g073590.1 Ribulose bisphosphate carboxylase, small ch... 89 9e-19
IMGA|AC233109_10.1 Ribulose bisphosphate carboxylase small chain... 79 6e-16
IMGA|AC233109_27.1 Ribulose bisphosphate carboxylase small chain... 79 7e-16
IMGA|Medtr8g129230.2 Ribulose bisphosphate carboxylase, small ch... 76 6e-15
IMGA|Medtr3g073680.1 Ribulose bisphosphate carboxylase small cha... 51 2e-07
>IMGA|Medtr6g020290.1 Ribulose bisphosphate carboxylase, small chain
chr06_pseudomolecule_IMGAG_V3 4746439-4748051 E
EGN_Mt090430 20090702
Length = 180
Score = 272 bits (695), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 124/153 (81%), Positives = 136/153 (88%)
Query: 1 MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
+VAPFTGLKS++AF VT+K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL+++
Sbjct: 22 LVAPFTGLKSSAAFPVTKKTNNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTEE 81
Query: 61 QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
QLAKEV YL+R VPCLEFELE GFVYRENH SPGYYDGRYWTMWKLP+FG TDS+QVL
Sbjct: 82 QLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDSSQVL 141
Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
KEL EAK AYP SFIRIIGFDN RQVQCISFIA
Sbjct: 142 KELAEAKAAYPESFIRIIGFDNVRQVQCISFIA 174
>IMGA|Medtr6g020290.2 Ribulose bisphosphate carboxylase, small chain
chr06_pseudomolecule_IMGAG_V3 4743477-4748051 E
EGN_Mt090430 20090702
Length = 177
Score = 271 bits (692), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 124/153 (81%), Positives = 135/153 (88%)
Query: 1 MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
+VAPFTGLKS++ F VT+K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL++D
Sbjct: 19 LVAPFTGLKSSAGFPVTKKTNNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTED 78
Query: 61 QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
QLAKEV YL+R VPCLEFELE GFVYRENH SPGYYDGRYWTMWKLP+FG TDS+QVL
Sbjct: 79 QLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDSSQVL 138
Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
KEL EAK AYP SFIRIIGFDN RQVQCISFIA
Sbjct: 139 KELAEAKAAYPESFIRIIGFDNVRQVQCISFIA 171
>IMGA|Medtr6g020280.1 Ribulose bisphosphate carboxylase, small chain
chr06_pseudomolecule_IMGAG_V3 4743477-4745017 F
EGN_Mt090430 20090702
Length = 177
Score = 271 bits (692), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 124/153 (81%), Positives = 135/153 (88%)
Query: 1 MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
+VAPFTGLKS++ F VT+K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL++D
Sbjct: 19 LVAPFTGLKSSAGFPVTKKTNNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTED 78
Query: 61 QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
QLAKEV YL+R VPCLEFELE GFVYRENH SPGYYDGRYWTMWKLP+FG TDS+QVL
Sbjct: 79 QLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDSSQVL 138
Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
KEL EAK AYP SFIRIIGFDN RQVQCISFIA
Sbjct: 139 KELAEAKAAYPESFIRIIGFDNVRQVQCISFIA 171
>IMGA|AC233685_63.3 Ribulose bisphosphate carboxylase, small chain;
ABC transporter related; Glycoside hydrolase, family 81
AC233685.2 269264-261629 E EGN_Mt090430 20090702
Length = 785
Score = 249 bits (636), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 1/152 (0%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQDQ 61
VAPF GLKS + F VT K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL+++Q
Sbjct: 25 VAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQ 83
Query: 62 LAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVLK 121
LAKEV YL+R V CLEFE E GFVYRENH SPGYYDGRYWTMWKLP+FG TD++QVLK
Sbjct: 84 LAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQVLK 143
Query: 122 ELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
EL+E AYPN+F+RIIGFDN RQVQCISFIA
Sbjct: 144 ELDEVVVAYPNAFVRIIGFDNVRQVQCISFIA 175
>IMGA|AC233685_63.1 Ribulose bisphosphate carboxylase, small chain
AC233685.2 269264-267394 E EGN_Mt090430 20090702
Length = 181
Score = 249 bits (635), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 1/152 (0%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQDQ 61
VAPF GLKS + F VT K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL+++Q
Sbjct: 25 VAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQ 83
Query: 62 LAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVLK 121
LAKEV YL+R V CLEFE E GFVYRENH SPGYYDGRYWTMWKLP+FG TD++QVLK
Sbjct: 84 LAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQVLK 143
Query: 122 ELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
EL+E AYPN+F+RIIGFDN RQVQCISFIA
Sbjct: 144 ELDEVVVAYPNAFVRIIGFDNVRQVQCISFIA 175
>IMGA|AC233109_18.1 Ribulose bisphosphate carboxylase, small chain
AC233109.4 68239-70681 E EGN_Mt090430 20090702
Length = 181
Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 115/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQDQ 61
VAPF GLKS + F +T K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL+++Q
Sbjct: 25 VAPFVGLKSMAGFPIT-KVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQ 83
Query: 62 LAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVLK 121
LAKEV YL+R V CLEFE E GFVYRENH SPGYYDGRYWTMWKLP+FG TD++QVLK
Sbjct: 84 LAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQVLK 143
Query: 122 ELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
EL+E AYPN+F+RIIGFDN RQVQCISFIA
Sbjct: 144 ELDEVVVAYPNAFVRIIGFDNVRQVQCISFIA 175
>IMGA|Medtr8g129230.1 Ribulose bisphosphate carboxylase, small chain
chr08_pseudomolecule_IMGAG_V3 30436036-30438784 E
EGN_Mt090430 20090702
Length = 173
Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 13/155 (8%)
Query: 5 FTGLKSTSA-------FSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPL 57
F GLKS S+ +S+ K T S G ++ CM+ W P+ K FETLSYLPPL
Sbjct: 15 FVGLKSNSSSLWPSATYSIEWKKKT-----VSNGSKIHCMKTWNPINNKKFETLSYLPPL 69
Query: 58 SQDQLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSA 117
S D +AKE+ Y+L+ PCLEF+ E G ++R N + PGYYDGRYWT+WKLPMFGC DS+
Sbjct: 70 SDDSIAKEIDYMLKKRWTPCLEFD-EFGCIHRANSQMPGYYDGRYWTLWKLPMFGCNDSS 128
Query: 118 QVLKELEEAKTAYPNSFIRIIGFDNKRQVQCISFI 152
QVL E+ E K YPN++IR + FDNKR +Q ++F+
Sbjct: 129 QVLNEINECKKTYPNAYIRCLAFDNKRHMQAMAFV 163
>IMGA|AC233685_63.2 Ribulose bisphosphate carboxylase, small chain
AC233685.2 269264-267394 E EGN_Mt090430 20090702
Length = 106
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQDQ 61
VAPF GLKS + F VT K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL+++Q
Sbjct: 25 VAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQ 83
Query: 62 LAKEVHYLLRMDRVPCLEFELE 83
LAKEV YL+R V CLEFE E
Sbjct: 84 LAKEVEYLIRKGWVACLEFETE 105
>IMGA|AC233109_2.1 Ribulose bisphosphate carboxylase, small chain
AC233109.4 19247-19908 E EGN_Mt090430 20090702
Length = 106
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQDQ 61
VAPF GLKS + F VT K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL+++Q
Sbjct: 25 VAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQ 83
Query: 62 LAKEVHYLLRMDRVPCLEFELE 83
LAKEV YL+R V CLEFE E
Sbjct: 84 LAKEVEYLIRKGWVACLEFETE 105
>IMGA|AC233109_9.1 Ribulose bisphosphate carboxylase, small chain
AC233109.4 42282-46041 E EGN_Mt090430 20090702
Length = 208
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQDQ 61
VAPF GLKS + F +T K N DITSI+S GGRV CMQVWPP+GKK FETLSYLPPL+++Q
Sbjct: 25 VAPFVGLKSMAGFPIT-KVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQ 83
Query: 62 LAKEVHYLLRMDRVPCLEFELE 83
LAKEV YL+R V CLEFE E
Sbjct: 84 LAKEVEYLIRKGWVACLEFETE 105
>IMGA|Medtr8g129230.3 Ribulose bisphosphate carboxylase, small chain
chr08_pseudomolecule_IMGAG_V3 30436036-30438784 E
EGN_Mt090430 20090702
Length = 93
Score = 115 bits (289), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 69 LLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVLKELEEAKT 128
+L+ PCLEF+ E G ++R N + PGYYDGRYWT+WKLPMFGC DS+QVL E+ E K
Sbjct: 1 MLKKRWTPCLEFD-EFGCIHRANSQMPGYYDGRYWTLWKLPMFGCNDSSQVLNEINECKK 59
Query: 129 AYPNSFIRIIGFDNKRQVQCISFI 152
YPN++IR + FDNKR +Q ++F+
Sbjct: 60 TYPNAYIRCLAFDNKRHMQAMAFV 83
>IMGA|Medtr3g073590.1 Ribulose bisphosphate carboxylase, small chain
chr03_pseudomolecule_IMGAG_V3 17066840-17066382 E
EGN_Mt090430 20090702
Length = 55
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 44/49 (89%)
Query: 105 MWKLPMFGCTDSAQVLKELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
MWKLP+FG TD++QVLKEL+E AYPN+F+RIIGFDN RQVQCISFIA
Sbjct: 1 MWKLPLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIA 49
>IMGA|AC233109_10.1 Ribulose bisphosphate carboxylase small chain
3A, chloroplastprecursor, putative AC233109.4
49321-50078 E EGN_Mt090430 20090702
Length = 109
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSY 53
VAPF GLKS + F VT K N DITSI+S GGRV CMQVWPP+GKK FETLSY
Sbjct: 25 VAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSY 75
>IMGA|AC233109_27.1 Ribulose bisphosphate carboxylase small chain
3A, chloroplastprecursor, putative AC233109.4
118515-119206 E EGN_Mt090430 20090702
Length = 101
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSY 53
VAPF GLKS + F VT K N DITSI+S GGRV CMQVWPP+GKK FETLSY
Sbjct: 25 VAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSY 75
>IMGA|Medtr8g129230.2 Ribulose bisphosphate carboxylase, small
chain chr08_pseudomolecule_IMGAG_V3 30436036-30436851 E
EGN_Mt090430 20090702
Length = 98
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 12/84 (14%)
Query: 5 FTGLKSTSA-------FSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPL 57
F GLKS S+ +S+ K T S G ++ CM+ W P+ K FETLSYLPPL
Sbjct: 15 FVGLKSNSSSLWPSATYSIEWKKKT-----VSNGSKIHCMKTWNPINNKKFETLSYLPPL 69
Query: 58 SQDQLAKEVHYLLRMDRVPCLEFE 81
S D +AKE+ Y+L+ PCLEF+
Sbjct: 70 SDDSIAKEIDYMLKKRWTPCLEFD 93
>IMGA|Medtr3g073680.1 Ribulose bisphosphate carboxylase small
chain 3A, chloroplastprecursor, putative
chr03_pseudomolecule_IMGAG_V3 17093039-17092308 H
EGN_Mt090430 20090702
Length = 109
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 2 VAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVW 40
VAPF GLKS + F VT K N DITSI+S GGRV CMQ +
Sbjct: 25 VAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQDY 62