Jatropha Genome Database

JcCA0154851.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154851.30 + phase: 0 /partial
         (112 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g120570.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V...   144   8e-36

>IMGA|Medtr2g120570.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
           28388705-28395880 E EGN_Mt090430 20090702
          Length = 412

 Score =  144 bits (364), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 84/108 (77%)

Query: 2   EDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGLK 61
           ++E DAFYVVRKGD+VGIY +L+D QAQ GSSVCDP V+V+KGY +  E EE+LLSHGLK
Sbjct: 88  QNESDAFYVVRKGDVVGIYNTLTDSQAQVGSSVCDPPVSVYKGYSMSNETEEYLLSHGLK 147

Query: 62  NATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDVL 109
           NA Y+I A D+++DLFG +VPCPFQ P+S+ G   +  S  +R  +VL
Sbjct: 148 NALYTIRASDLKEDLFGTLVPCPFQDPSSTQGTTSNADSSKKRALEVL 195