Jatropha Genome Database

JcCA0154831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154831.20 - phase: 2 /TE
         (283 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy...    86   2e-17
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    85   3e-17
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H...    84   7e-17
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    83   1e-16
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po...    70   9e-13
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole...    63   2e-10
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H...    49   2e-06

>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
            transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
            EGN_Mt090430 20090702
          Length = 1413

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 31/241 (12%)

Query: 21   GSQGIFLSQRKYVLDLLAXDRNAXTXACRHTYSPKQCFDXTNR----SYINKQRDTI--- 73
             SQGI L QRKY LDLL  D          T S   C    +     S I   R  I   
Sbjct: 1120 SSQGISLCQRKYCLDLLT-DIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLIGRL 1178

Query: 74   --LSHTQPNIAYFVRLASQFMHNQSEE---PVNDVFRTVKILSREGDHVXEVXSFKYSGY 128
              L++T+P I +  +  SQF+++ +E+       + R +K    +G       S   SGY
Sbjct: 1179 IYLTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGY 1238

Query: 129  FDVEWAGSISDRKSISGYFTFMGNNLITXEIRSKMXLLYVLLTPN------LGA--CELI 180
             D +WAG +  R+SISG   F+G++LI+ + + +   L V  + +      LGA  CEL 
Sbjct: 1239 SDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQ---LTVSRSSSEAEYRALGAATCELQ 1295

Query: 181  WLKELMEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLENKIIQF 233
            WL  L+ ++     +   L+C+N++AL        H RTKH+E+D H ++EKL+  I++ 
Sbjct: 1296 WLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKL 1355

Query: 234  I 234
            +
Sbjct: 1356 L 1356


>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
            EGN_Mt090430 20090702
          Length = 1275

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 27/236 (11%)

Query: 24   GIFLSQRKYVLDLLAXDRNAXTXACRHTYSPK-QCFDXTNRSY--INKQRDTI-----LS 75
            GI L QRKY LDLL    +  +        P  +    T+  Y  I   R  +     L+
Sbjct: 978  GISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLVGRLLYLN 1037

Query: 76   HTQPNIAYFVRLASQFMHNQSEEPVNDVFRTVKILSR---EGDHVXEVXSFKYSGYFDVE 132
            +T+P+I +  +  SQF+ N +    N   RT++ L     +G       S    G+ D +
Sbjct: 1038 NTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDAD 1097

Query: 133  WAGSISDRKSISGYFTFMGNNLITXEI-------RSKMXLLYVLLTPNLGACELIWLKEL 185
            WAG +  RKS++G   F+GN+LI+          RS     Y  L      CE+ WL  L
Sbjct: 1098 WAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALAS--ATCEIQWLLYL 1155

Query: 186  MEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLENKIIQFI 234
            + ++     +   L+C+N++AL        H RTKH+E+D H ++EKL+  +++ +
Sbjct: 1156 LNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLL 1211


>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
            EGN_Mt090430 20090702
          Length = 1396

 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 111/239 (46%), Gaps = 33/239 (13%)

Query: 24   GIFLSQRKYVLDLLAXDRNAXTXACRHTYSPKQCFDXTNRSY------INKQRDTI---- 73
            GI L Q+KY LDLLA   ++ T   +   +P       ++        I   R  I    
Sbjct: 1106 GISLCQKKYCLDLLA---DSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLIGRLL 1162

Query: 74   -LSHTQPNIAYFVRLASQFMHNQSEEPVNDVFRTVKILSR---EGDHVXEVXSFKYSGYF 129
             L+ T+P+I Y  +  SQF+   +    +   R ++ L     +G         +  GY 
Sbjct: 1163 YLNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYS 1222

Query: 130  DVEWAGSISDRKSISGYFTFMGNNLITXEI-------RSKMXLLYVLLTPNLGACELIWL 182
            D +WAG +  R+SISG   F+GN+LI+          RS     Y  L      CEL WL
Sbjct: 1223 DADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALAS--ATCELQWL 1280

Query: 183  KELMEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLENKIIQFI 234
              L++++     +   LFC+N++AL        H RTKH+E+D H ++EKL + I++ +
Sbjct: 1281 IYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKLL 1339


>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
            EGN_Mt090430 20090702
          Length = 1414

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 39/242 (16%)

Query: 24   GIFLSQRKYVLDLLAXDRNAXTXACRHTYSPKQCFDXTNRSYINKQ-------------- 69
            GI L QRKY LDLLA   +  +   +   +P    D + + +++                
Sbjct: 1132 GISLCQRKYCLDLLA---DIGSLGSKPISTPS---DSSIKLHLDSSSPFEDVPACRRLVG 1185

Query: 70   RDTILSHTQPNIAYFVRLASQFMHNQSEEPVNDVFRTVKILSR---EGDHVXEVXSFKYS 126
            R   L++T+P+I +  +  SQF+   ++   +   R +K L     +G       S    
Sbjct: 1186 RLLYLNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQ 1245

Query: 127  GYFDVEWAGSISDRKSISGYFTFMGNNLITXEIRSKMXLL-------YVLLTPNLGACEL 179
            G+ D +WAG I  R+SISG   F+GN+LI+   + ++ +        Y  L      CEL
Sbjct: 1246 GFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALAS--ATCEL 1303

Query: 180  IWLKELMEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLENKIIQ 232
             W+  L++++     +   L+C+N++A+        H RTKH+E+D H I++KL++ +++
Sbjct: 1304 QWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLK 1363

Query: 233  FI 234
             +
Sbjct: 1364 LL 1365


>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
           polymerase chr05_pseudomolecule_IMGAG_V3
           33218578-33217607 H EGN_Mt090430 20090702
          Length = 309

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 43/237 (18%)

Query: 21  GSQGIFLSQRKYVLDLLAXDRNAXTXACRHTYSPKQ------------CFDXTN-RSYIN 67
           G+ G+F+ QRKY LD+L   +      C+ +  P +            C D +  R  I+
Sbjct: 50  GANGLFMCQRKYTLDILDECKML---DCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLIS 106

Query: 68  KQRDTILSHTQPNIAYFVR-LASQFMHNQSEEPVNDVFRTVKILSREGDHVXEVXSFKYS 126
             R   L+   P I Y V  L  + +      P   +     IL +E D        +  
Sbjct: 107 --RLIYLTIMHPEITYSVHILTMRVLRYLKSSPGQGI-----ILPKEND-------LQLV 152

Query: 127 GYFDVEWAGSISDRKSISGYFTFMGNNLITXEIR-----SKMXLLYVLLTPNLGACELIW 181
            Y D +WA     R+S SGY   +G+  I+ + +     SK               E+IW
Sbjct: 153 AYCDSDWASCPLTRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIW 212

Query: 182 LKELMEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLENKII 231
           L+ L+  +   +D    L C+N+AA+        H RTKH+EVD HFI+  L+   I
Sbjct: 213 LRSLLSSLQVHYDSPTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTI 269


>IMGA|Medtr4g157500.1 polyprotein-like, putative
           chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
           EGN_Mt090430 20090702
          Length = 260

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 22/201 (10%)

Query: 23  QGIFLSQRKYVLDLLAXDR--NAXTXACRHTYSPKQCFDXTNRSY--INKQRDTI----- 73
           QGI L QRKY LDLL+     N+   +     S K   D ++  Y  I   R  I     
Sbjct: 62  QGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHND-SSPPYEDIPSYRRLIGRLLY 120

Query: 74  LSHTQPNIAYFVRLASQFMHNQSEEPVNDVFRTVKIL---SREGDHVXEVXSFKYSGYFD 130
           L+ T+P+I +  +  SQF+   ++   N   R +K L     +G       S    G+ D
Sbjct: 121 LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSD 180

Query: 131 VEWAGSISDRKSISGYFTFMGNNLITXEI-------RSKMXLLYVLLTPNLGACELIWLK 183
           V+WAG +  R+SISG   F+GN+LI+          RS     Y  L      CEL W+ 
Sbjct: 181 VDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALAS--ATCELQWIL 238

Query: 184 ELMEEIDYPFDEEIKLFCNNK 204
            L+++++    +   LFC+N+
Sbjct: 239 YLLKDLNIQSSKLPVLFCDNQ 259


>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
           fold, related chr05_pseudomolecule_IMGAG_V3
           36507044-36505941 H EGN_Mt090430 20090702
          Length = 367

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 176 ACELIWLKELMEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLEN 228
            CE+ WL  L+++ +  F     L+C++++A         H RTKH+E+D H ++EKL+ 
Sbjct: 265 VCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHERTKHIELDCHIVREKLQQ 324

Query: 229 KIIQFI 234
           K+   +
Sbjct: 325 KLFHLL 330