Jatropha Genome Database

JcCA0154801.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154801.50 - phase: 2 /partial
         (90 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g009840.1 Leucine-rich repeat, cysteine-containing su...    86   4e-18

>IMGA|Medtr7g009840.1 Leucine-rich repeat, cysteine-containing
           subtype chr07_pseudomolecule_IMGAG_V3 1924311-1926211 E
           EGN_Mt090430 20090702
          Length = 147

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 1   CCEEITDAAFQGLATIKTELGLKILKVSNCPKITVTGIGMLLEKCNGLEYLDVRSCPHVT 60
           CCEE+TD AF  ++  +  L LKILKVSNCPKITV GIG+L+ KC+ LEYLDVRSCPH++
Sbjct: 62  CCEEVTDTAFHHISNEEPCLSLKILKVSNCPKITVVGIGILVGKCSYLEYLDVRSCPHIS 121