Jatropha Genome Database

JcCA0154801.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154801.30 + phase: 0 
         (68 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g143990.1 Isopenicillin N synthetase; GRAM chr01_pseu...    47   3e-06

>IMGA|Medtr1g143990.1 Isopenicillin N synthetase; GRAM
           chr01_pseudomolecule_IMGAG_V3 32004369-32005386 E
           EGN_Mt090430 20090702
          Length = 222

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 6/59 (10%)

Query: 3   KFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEKL 55
           +  +KA++ +Q V+EHV        T KR ++LG +ILQ+G V+K+F Q F V E E+L
Sbjct: 54  RLARKADSLSQRVQEHVRVGANISKTIKRTLSLGAQILQMGGVEKVFTQYFSVTEGERL 112