Jatropha Genome Database

JcCA0154771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154771.20 - phase: 0 
         (175 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140030.1 Transport protein particle (TRAPP) componen...   313   3e-86

>IMGA|Medtr7g140030.1 Transport protein particle (TRAPP) component,
           Bet3 chr07_pseudomolecule_IMGAG_V3 33631848-33628850 F
           EGN_Mt090430 20090702
          Length = 176

 Score =  313 bits (802), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 150/176 (85%), Positives = 161/176 (91%), Gaps = 1/176 (0%)

Query: 1   MGREVSESCVDSLLTEMVSSYCNRFDANKPELAGRRIEAIGYQVGHQLAERYTMERPRFS 60
           M REVSESCVDSL+TEMV+ YCNRF ANKPELA RRIEAIGYQVG QL+ERYTMERPRF 
Sbjct: 1   MVREVSESCVDSLMTEMVACYCNRFYANKPELAARRIEAIGYQVGQQLSERYTMERPRFG 60

Query: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLARMSVDPTIESGGASQD 120
           DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDN+F WLARMSVDP+ ++  + +D
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFPWLARMSVDPSTDNVSSVED 120

Query: 121 PSA-LAENKATQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175
            SA  AE+KA QAMSMHLYFPCGIIRGALSNLGIPCAVSADIS+LPACSFVVRIKA
Sbjct: 121 YSAPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISSLPACSFVVRIKA 176