Jatropha Genome Database

JcCA0154771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154771.10 - phase: 0 /pseudo
         (340 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g132680.1 Frigida-like chr02_pseudomolecule_IMGAG_V3 ...    53   3e-07
IMGA|Medtr2g010450.1 Frigida-like chr02_pseudomolecule_IMGAG_V3 ...    52   6e-07
IMGA|Medtr8g099150.1 Frigida-like chr08_pseudomolecule_IMGAG_V3 ...    50   1e-06

>IMGA|Medtr2g132680.1 Frigida-like chr02_pseudomolecule_IMGAG_V3
           32158387-32161241 E EGN_Mt090430 20090702
          Length = 525

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 106 ELETLNDKIGRKLEVLDGIQKRFESFNNDIEKRACDVKVMEGKLVREIEVKKVQCERAFN 165
           +LE+ N    R++E     QK+FE   N++E +   +KV E    +E+ +K+ Q E    
Sbjct: 293 QLESKNKHFERQVEDFKSKQKQFEGRWNELETKEYKLKVNE----KELNLKEKQFEGQVK 348

Query: 166 ELKLKEKQIEERAKEIASQDESLNEQCKVLRXXXXXXXXXXXXXXQIQERVREXSXRTRK 225
           + K K  + + + KE  S+ + ++E+ + +                +Q    E +   + 
Sbjct: 349 DPKSKMNKFDGQLKEPESRKKYIDEEKESVASYMHDQSSRAFGGTSLQLGTSEKTDGVQS 408

Query: 226 LWKNIKRLNRRRGNCFIQKLISKKQHIEAIGIIHAFKLANKFPPVLLLKDYLDNSXXXXX 285
           L+  I  +N +    F++ LI++ Q + A+    A+ L +K   V +L+ Y+ N+     
Sbjct: 409 LYNGI-LVNLQESADFVEHLINRNQTVAAVKFSFAYDLDDKDHLVDMLRKYVKNAKLICE 467

Query: 286 XXXXXXXSLEGQIEAREKRIADVKCALRCIGNYNIEYGPSLGSLH 330
                  S+  + +AR++ IA +   L+CI + N+E   S G LH
Sbjct: 468 SSCKKSNSIGIKDKARDEEIASLGTVLQCISDSNLE---STGLLH 509


>IMGA|Medtr2g010450.1 Frigida-like chr02_pseudomolecule_IMGAG_V3
           2539346-2543148 E EGN_Mt090430 20090702
          Length = 840

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 241 FIQKLISKKQHIEAIGIIHAFKLANKFPPVLLLKDYLDNSXXXXXXXXXXXXSLEGQIEA 300
           F+Q LI K+Q+IEA+  I A+  A K   V LL++++ N+            S+E + +A
Sbjct: 739 FVQNLIMKQQYIEAVRFICAYNTATKNQSVGLLREHVQNARSINESSCKATNSIEIKDKA 798

Query: 301 REKRIADVKCALRCIGNYNIEYGPSLGSLH 330
           +++ IA +   L+C+ + N+E    L  +H
Sbjct: 799 KDQEIASLGTVLQCLSDNNMESVDLLNEIH 828


>IMGA|Medtr8g099150.1 Frigida-like chr08_pseudomolecule_IMGAG_V3
           21730398-21731834 E EGN_Mt090430 20090702
          Length = 272

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 240 CFIQKLISKKQHIEAIGIIHAFKLANKFPPVLLLKDYLDNSXXXXXXXXXXXXSLE-GQI 298
             I+ LI+  +HI A+  +  FKL   FPPV LL+ YL N              +   +I
Sbjct: 67  ALIEALINNGKHIAAVHFVQLFKLQESFPPVPLLRTYLKNQRRNSQVKADNVRDIATAKI 126

Query: 299 EAREKRIADVKCALRCIGNYNIEYGPSLGSLHQMVVSLEEG 339
           +A  + +A ++  ++CI  Y  E    L +LH+ V  LE+ 
Sbjct: 127 DANAQELAALRNVIKCIEEYEFESEYPLDTLHKRVHQLEKA 167